ID A0A398A3Z6_BRACM Unreviewed; 738 AA.
AC A0A398A3Z6;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRARA_C01987 {ECO:0000313|EMBL:RID69923.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID69923.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID69923.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM010630; RID69923.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A398A3Z6; -.
DR Proteomes; UP000264353; Chromosome a3.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694:SF123; JMJC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 160..201
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 347..508
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 39..83
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..16
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 738 AA; 82644 MW; 07B281402BB53011 CRC64;
MGIEGGNTSS KSGNVDKFLS PPPGFEGCSK SVKVEKLLSP PPGFEGVNRS SKSGNVDKFL
SPPPGFEGVN RSSKSGNVDK FLSPPPGFES QARFVLRKVQ EKTNGFRPGD ADSFQKLVNS
RPWIVHDHTT PSSGVLKPTK PQVHPRRLPR VSKKVVLEEA PVFNPTEKEY NDTLSYIASL
RDISEPHGIC CVVPPPSWDP PCLLGERKIW EGSRFFTQVQ IFDGVQTEDP KIKKETDADS
DDDDTFHKVK FCRTELGNEY TLETFKNFAD SYLESHFRVK EKVLASMYSS PSVDAWPTVA
DVEKEFRKLL VNPFVELGVL YGNNIDTKTF GSGFPLSGSS ESCKYKTSGW NLNNTAKLPG
SLLTFDDCES VCVPRLSVGM CLSSQLWKSE KERLYSLCYL HTGAPRVWYS VAGCHRYKFK
AFMESFVPKV SGEQSKRSYD SVMAMSPYAL HMEGIPVTRC VQNRGQYVIL FPGTYYSAVD
CGFNCLEIAN FATLDWLPHK EIDALHNQEK KRKSLLSYDK VLFGAASEAV KCLKEYSLTK
KETSGNMRWF NACGKEGMFS NTVKSRVKKE KSRVQYLSGP LKPQRMKESF DDVSKRACCV
CFVDLHLSAV QCSCSADRYS CLSHMKNLCA CPYDKKSFLY RYTIDELNIL AEALEQRKLS
CMFKWGNIDG NYCASPAIRS SQPGGDKGKT TDEVMQDVET GGKEQMKARG KVRSIIEIMN
VKEENDNESG PVDPKPLF
//
