ID A0A398AQU2_BRACM Unreviewed; 1149 AA.
AC A0A398AQU2;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=CHD3-type chromatin-remodeling factor PICKLE {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRARA_A00587 {ECO:0000313|EMBL:RID77703.1};
OS Brassica campestris (Field mustard).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3711 {ECO:0000313|EMBL:RID77703.1, ECO:0000313|Proteomes:UP000264353};
RN [1] {ECO:0000313|EMBL:RID77703.1, ECO:0000313|Proteomes:UP000264353}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B-3 {ECO:0000313|Proteomes:UP000264353};
RA Bowman J., Kohchi T., Yamato K., Jenkins J., Shu S., Ishizaki K.,
RA Yamaoka S., Nishihama R., Nakamura Y., Berger F., Adam C., Aki S.,
RA Althoff F., Araki T., Arteaga-Vazquez M., Balasubrmanian S., Bauer D.,
RA Boehm C., Briginshaw L., Caballero-Perez J., Catarino B., Chen F.,
RA Chiyoda S., Chovatia M., Davies K., Delmans M., Demura T., Dierschke T.,
RA Dolan L., Dorantes-Acosta A., Eklund D., Florent S., Flores-Sandoval E.,
RA Fujiyama A., Fukuzawa H., Galik B., Grimanelli D., Grimwood J.,
RA Grossniklaus U., Hamada T., Haseloff J., Hetherington A., Higo A.,
RA Hirakawa Y., Hundley H., Ikeda Y., Inoue K., Inoue S., Ishida S., Jia Q.,
RA Kakita M., Kanazawa T., Kawai Y., Kawashima T., Kennedy M., Kinose K.,
RA Kinoshita T., Kohara Y., Koide E., Komatsu K., Kopischke S., Kubo M.,
RA Kyozuka J., Lagercrantz U., Lin S., Lindquist E., Lipzen A., Lu C.,
RA Luna E., Martienssen R., Minamino N., Mizutani M., Mizutani M.,
RA Mochizuki N., Monte I., Mosher R., Nagasaki H., Nakagami H., Naramoto S.,
RA Nishitani K., Ohtani M., Okamoto T., Okumura M., Phillips J., Pollak B.,
RA Reinders A., Roevekamp M., Sano R., Sawa S., Schmid M., Shirakawa M.,
RA Solano R., Spunde A., Suetsugu N., Sugano S., Sugiyama A., Sun R.,
RA Suzuki Y., Takenaka M., Takezawa D., Tomogane H., Tsuzuki M., Ueda T.,
RA Umeda M., Ward J., Watanabe Y., Yazaki K., Yokoyama R., Yoshitake Y.,
RA Yotsui I., Zachgo S., Schmutz J.;
RT "WGS assembly of Brassica rapa FPsc.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM010628; RID77703.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A398AQU2; -.
DR Proteomes; UP000264353; Chromosome a1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR CDD; cd18660; CD1_tandem; 1.
DR CDD; cd18659; CD2_tandem; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 2.40.50.40; -; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR009462; CHD_II_SANT-like.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR009463; DUF1087.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR45623:SF17; CHD3-TYPE CHROMATIN-REMODELING FACTOR CHR7-RELATED; 1.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR Pfam; PF06461; CHDII_SANT-like; 1.
DR Pfam; PF00385; Chromo; 2.
DR Pfam; PF06465; DUF1087; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00298; CHROMO; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01146; DUF1086; 1.
DR SMART; SM01147; DUF1087; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50013; CHROMO_2; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 49..125
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 142..201
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 237..418
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 543..702
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1149 AA; 133239 MW; DCD3C1AB3D750B9B CRC64;
MSMLRKRPDR RPLYTVDDSD DDDDFVQNKD QATEIVEGTV GREAVTPLTE MEKILDCQMR
PTTSNDPDSS DSAAPKQVVV KQYLVKWKGL SYLHCSWVAE EEFQKAYKFI RRLRSKVIKF
HSTMESMSNS GDDFVAIHPE WTTVDRIIDC RGEGEDKEYL VKFKELSYDE CYWESESDIS
TFQNEIQRFK DINSGHRRDK YVDHERNHED FKQFDHTPEF ITGSLHPYQL EGLNFLRFTW
SNRTHVILAD EMGLGKTIQS IAFLASLFEE NLAPYLVVAP LSTLRNWERE FATWAPHMNV
VMYGGTSQAR TVVRDHEFYF PKGHNKMIGI SGESRQDRIK FDVILTSYEM INVDTEVLKP
IKWKCMIVDE GHRLKNKNSK LFNSLKQYTS EHRILLTGTP LQNNLDELFV LMHFLDGEKF
GSLEEFQEQY KDIDQEEQIS RLHKMLSPHL LRRVKKDVLK DMPSKKELIL RVDLSSKQKI
IYKAIMTRNY KILAKRGAKI SNVLMELRKA CLHPYMVEGV ESQIKDENEA LKELLESSGK
LQLLDQMMVK LKEQGHRVLI YSQFQHMLDL LEDYCAYKKW FYERIDGKVN GAERQARIDR
FNAKNSNRFC FLLSTRAGGV GINLATADTV FIYDSDWNPY ADLQAMARAH RIGQTEKVMI
YRLISRGTIE EKIVQICKRK MLLEHLVVGK LKAPNLSQEE LDDIIRYGSK ELFAEENDEA
GKFGKIHYDD AAIEKLLDRD HIDAEEDSVD DENENGFFKA FKVANFEFID DNEAAASEEA
QDIESKSSSE NYWEYLLKDK YEVQQAEEVN ALGKRKRNCK QKLGEDELAY LEASSDNEED
EQTEAEDELA YLEVSSDDCV ASGQGNQIAY WPWTPASSAY EEAKPMDGEA ARQGNQMAKR
PYHRTRDTLE PIPLIEGEGR FLKVLGFNEL QRKKFLTTLE RYGVGNYDWK EFVDPLKPRT
YDEIRSYGLR FLKHIVEDKD VNSPTFSDGV PKEGLKCKDV LARIASVMLV QKKVKHMEAN
PTNPVFSDRI LHRFPGLRLR RAKFANEECD RILLSAVSKN GVGKWRALVN DIEFGIYELV
RKELNIPPTS FINANGIVKD PDIIITDHMR RRFLILEEAI INEFAEDYYF VCDSLTSFDL
YMCVAAEAL
//
