ID A0A399SI93_9BACT Unreviewed; 475 AA.
AC A0A399SI93;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=HD domain-containing protein {ECO:0000313|EMBL:RIJ42599.1};
GN ORFNames=D1627_01715 {ECO:0000313|EMBL:RIJ42599.1};
OS Pontibacter oryzae.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae;
OC Pontibacter.
OX NCBI_TaxID=2304593 {ECO:0000313|EMBL:RIJ42599.1, ECO:0000313|Proteomes:UP000266005};
RN [1] {ECO:0000313|Proteomes:UP000266005}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KIRAN {ECO:0000313|Proteomes:UP000266005};
RA Seo T.;
RT "Mucilaginibacter sp. MYSH2.";
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A)
CC polymerase family. {ECO:0000256|RuleBase:RU003953}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RIJ42599.1}.
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DR EMBL; QWGE01000001; RIJ42599.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A399SI93; -.
DR OrthoDB; 9805698at2; -.
DR Proteomes; UP000266005; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0031123; P:RNA 3'-end processing; IEA:UniProt.
DR GO; GO:0042245; P:RNA repair; IEA:UniProtKB-KW.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd00077; HDc; 1.
DR CDD; cd05398; NT_ClassII-CCAase; 1.
DR Gene3D; 1.10.246.80; -; 1.
DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 1.
DR Gene3D; 1.10.3090.10; cca-adding enzyme, domain 2; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR002646; PolA_pol_head_dom.
DR InterPro; IPR032828; PolyA_RNA-bd.
DR NCBIfam; TIGR00277; HDIG; 1.
DR PANTHER; PTHR47545; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR PANTHER; PTHR47545:SF1; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF01743; PolyA_pol; 1.
DR Pfam; PF12627; PolyA_pol_RNAbd; 1.
DR SMART; SM00471; HDc; 1.
DR SUPFAM; SSF81301; Nucleotidyltransferase; 1.
DR SUPFAM; SSF81891; Poly A polymerase C-terminal region-like; 1.
PE 3: Inferred from homology;
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW RNA repair {ECO:0000256|ARBA:ARBA00022800};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU003953};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU003953};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694}.
FT DOMAIN 253..377
FT /note="HD/PDEase"
FT /evidence="ECO:0000259|SMART:SM00471"
SQ SEQUENCE 475 AA; 54110 MW; 2C3435B4C03F7CDF CRC64;
MDKVQLPEHP IFNVVAEAAA ELGVDAYVIG GFVRDLVLKR PSKDIDVVCV GDGIALATQV
AMKLPNRPKV SIFKNFGTAM LRAGEWEVEF VGARKESYRE HSRKPEVEQG SLNDDLHRRD
FTINALGISL NTQNYGELID AFEGVKDMRR QLIRTPLEPG ITFSDDPLRM MRAIRFASQL
GFDIDPDTFD AIIDNKERIK IVSQERITDE LNKIILSPVP SYGFKLLFVS GLLHLIFPKM
VELQGVETIN GNSHKDNFYH TLQVLDNVAE VSDDLWLRWA AIMHDIAKPD TKRYSPKVGW
TFHGHEDRGA RMVPKLFRDL KLPLNEHMKF VQKLVRLHLR PIALVKESVT DSAIRRLLFE
TGDDIDALMK LCRADITSKN DTKVKRYLHN FDKVEKRLVE VEESDKLRNF QPVITGEIIM
ETFGLKPSKT VGELKEILTE AILEGKVKNE FDEAYAFLLE KGKELGLHQI HSSNN
//
