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Database: UniProt
Entry: A0A3B3HFX8_ORYLA
LinkDB: A0A3B3HFX8_ORYLA
Original site: A0A3B3HFX8_ORYLA 
ID   A0A3B3HFX8_ORYLA        Unreviewed;      1506 AA.
AC   A0A3B3HFX8;
DT   05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 1.
DT   24-JAN-2024, entry version 28.
DE   RecName: Full=Polybromo 1, like {ECO:0008006|Google:ProtNLM};
OS   Oryzias latipes (Japanese rice fish) (Japanese killifish).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae;
OC   Oryzias.
OX   NCBI_TaxID=8090 {ECO:0000313|Ensembl:ENSORLP00000030178.1, ECO:0000313|Proteomes:UP000001038};
RN   [1] {ECO:0000313|Ensembl:ENSORLP00000030178.1, ECO:0000313|Proteomes:UP000001038}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000030178.1,
RC   ECO:0000313|Proteomes:UP000001038};
RX   PubMed=17554307; DOI=10.1038/nature05846;
RA   Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T.,
RA   Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A.,
RA   Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S.,
RA   Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S.,
RA   Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K.,
RA   Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y.;
RT   "The medaka draft genome and insights into vertebrate genome evolution.";
RL   Nature 447:714-719(2007).
RN   [2] {ECO:0000313|Ensembl:ENSORLP00000030178.1}
RP   IDENTIFICATION.
RC   STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000030178.1};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   STRING; 8090.ENSORLP00000030178; -.
DR   Ensembl; ENSORLT00000044389.1; ENSORLP00000030178.1; ENSORLG00000027762.1.
DR   GeneTree; ENSGT00390000003017; -.
DR   InParanoid; A0A3B3HFX8; -.
DR   Proteomes; UP000001038; Chromosome 2.
DR   Bgee; ENSORLG00000027762; Expressed in blastula and 14 other cell types or tissues.
DR   GO; GO:0016586; C:RSC-type complex; IBA:GO_Central.
DR   GO; GO:0016514; C:SWI/SNF complex; IBA:GO_Central.
DR   GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR   GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd04717; BAH_polybromo; 2.
DR   CDD; cd05524; Bromo_polybromo_I; 1.
DR   CDD; cd05517; Bromo_polybromo_II; 1.
DR   CDD; cd05526; Bromo_polybromo_VI; 1.
DR   CDD; cd21984; HMG-box_PB1; 1.
DR   Gene3D; 2.30.30.490; -; 2.
DR   Gene3D; 1.20.920.10; Bromodomain-like; 4.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   InterPro; IPR001025; BAH_dom.
DR   InterPro; IPR043151; BAH_sf.
DR   InterPro; IPR001487; Bromodomain.
DR   InterPro; IPR036427; Bromodomain-like_sf.
DR   InterPro; IPR018359; Bromodomain_CS.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR037382; Rsc/polybromo.
DR   PANTHER; PTHR16062:SF19; PROTEIN POLYBROMO-1; 1.
DR   PANTHER; PTHR16062; SWI/SNF-RELATED; 1.
DR   Pfam; PF01426; BAH; 2.
DR   Pfam; PF00439; Bromodomain; 4.
DR   Pfam; PF00505; HMG_box; 1.
DR   PRINTS; PR00503; BROMODOMAIN.
DR   SMART; SM00439; BAH; 2.
DR   SMART; SM00297; BROMO; 4.
DR   SMART; SM00398; HMG; 1.
DR   SUPFAM; SSF47370; Bromodomain; 4.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS51038; BAH; 2.
DR   PROSITE; PS00633; BROMODOMAIN_1; 1.
DR   PROSITE; PS50014; BROMODOMAIN_2; 3.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   4: Predicted;
KW   Bromodomain {ECO:0000256|ARBA:ARBA00023117, ECO:0000256|PROSITE-
KW   ProRule:PRU00035}; DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001038}.
FT   DOMAIN          63..133
FT                   /note="Bromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50014"
FT   DOMAIN          198..268
FT                   /note="Bromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50014"
FT   DOMAIN          500..570
FT                   /note="Bromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50014"
FT   DOMAIN          773..891
FT                   /note="BAH"
FT                   /evidence="ECO:0000259|PROSITE:PS51038"
FT   DOMAIN          959..1075
FT                   /note="BAH"
FT                   /evidence="ECO:0000259|PROSITE:PS51038"
FT   DOMAIN          1169..1237
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        1169..1237
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          1..37
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1226..1249
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1266..1353
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1377..1397
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..23
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1283..1307
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1506 AA;  172213 MW;  AB8D0D4DD355E430 CRC64;
     MSASSKRRRA SSPCSSSAAS GGADLAASTP GRKRKRTSYI PPVDTIAVCH GLFHAVRDYK
     DDQGRQLCEV FLRVPKRRNQ PDYYEAVSQP IDMTKIQNKL ISEEYNDVEQ LTADFQLMYN
     NARSFYKPDS EEYQAACKLW DVYLQSKNEF VQPGDGEDED GDDIEENPWL SAEEEASSSL
     KEVLEQLLEA IVFHTDSSGR CVSEFFQKLP SKVQYPDYYA IIKEPIDLRM IAQRIQIGHY
     KSISAMTKDI DLMTKNAKTY NEQGSQIFKD ANTIKKVFIQ LKTELEHAEP TSSRMLFLSR
     NRRSGQGGLL SSGTVALQYG SESEEDPVLS GRFWSFLSRI NCVKVIAILL FVCRQTQSNK
     NHVLFLTCSC GDIEVKDEKI DDLGLKMVDV ACAGGDMEVK EEKIDDLGLK LVDVACADGD
     MKVKEEKIDD FGLKLVDVAY ADGNIEVMDE KIDDLGPKLV DVEYAGGKIY KSTKNSEYLT
     PLQQKLNELY DSVQNFTDCR GRCLSKIFHH LQIHSELPDD NAAIKKPINM ERIRSHMATC
     RYQDVDALVE DFALMFNYVC MYNEPESLIY RDALVLHRVL LETRKQQGGE DSGPPAVRLL
     VRELIRNLFV SVMSHQDEER RCYSDSLAKI PAVDPAAPEK PPLNFEIIQM NVERGHYRRL
     DVFQEHMFEV LKKARRLHRT DSKIFEDAVE LQYFLIKTRD ELCKNGEILM STALHYTLKL
     LQSDVDLEKR EKIPREIEED KKKAKEKREK NKGNPWEPNP LLKYVKECSF DNITYSVGEF
     VYVEPSEVYF KPHIVCIDRL WEDSTGVMWL YGCWLKRPSE TIHHVSKTFL EKEVFKSYYY
     NRVPISKVLG KCVVLSVKDY FEMQPEGFKP IDVYVCKSRQ GVKARSFKKI KVWNMPQSPV
     KLVRRVVPLP VVYASRFTEP DLDKASFSHI LDIFKDVPME INGAEPGCQY FEQLCYNNMR
     FKLGDCVYIQ SHGLSKPRVA RIEKLWLQNG TTFFFGPIFI HPEETEHEPT KMFYKREVFL
     SHLEETLPMT CVLGKCMVSS FKEYLSCRPT EYTEEDILLC ESSYIETEKQ VKKLEGLKRF
     SYSSKVVEDE IYYFRKLYEP QKEASPFLDK KIDELELKLA DMDEDECAPV TPSMPQMQSS
     LSSDMDIMPY TPSQASPKVM GLSKRGAKRK MNISGYIFFS SKMRAVFKAR HPDLSFGELS
     RLVGTEWRNL EASTKAEYEE CAAKLAEQQE PERPPQERAS PPAGTPVGAL MGVDELELKL
     ADMEDGHDDM EDMDKDDDAP VTPSMPQMQN TPSRHHRPPS FQHQSKPSLH PCRHRSMEVT
     DSPPPPPPPP HISQETASTI NSDSLPQPAA PPVYPIKTII TDRSSMREHA GRKANINCLC
     PPKEAPNPEE AGSTTTPPSS FNMALFNVRS LSNKTFIIKD FIHNYNIDGL FLTETWLSTD
     ASAVLTEASP PNFSFIFQPG REITLDEYPS FEHNALFLTA LLQFYASQFT DHPKQALFLL
     RSFQSF
//
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