ID A0A3B3HFX8_ORYLA Unreviewed; 1506 AA.
AC A0A3B3HFX8;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE RecName: Full=Polybromo 1, like {ECO:0008006|Google:ProtNLM};
OS Oryzias latipes (Japanese rice fish) (Japanese killifish).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae;
OC Oryzias.
OX NCBI_TaxID=8090 {ECO:0000313|Ensembl:ENSORLP00000030178.1, ECO:0000313|Proteomes:UP000001038};
RN [1] {ECO:0000313|Ensembl:ENSORLP00000030178.1, ECO:0000313|Proteomes:UP000001038}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000030178.1,
RC ECO:0000313|Proteomes:UP000001038};
RX PubMed=17554307; DOI=10.1038/nature05846;
RA Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T.,
RA Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A.,
RA Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S.,
RA Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S.,
RA Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K.,
RA Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y.;
RT "The medaka draft genome and insights into vertebrate genome evolution.";
RL Nature 447:714-719(2007).
RN [2] {ECO:0000313|Ensembl:ENSORLP00000030178.1}
RP IDENTIFICATION.
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000030178.1};
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR STRING; 8090.ENSORLP00000030178; -.
DR Ensembl; ENSORLT00000044389.1; ENSORLP00000030178.1; ENSORLG00000027762.1.
DR GeneTree; ENSGT00390000003017; -.
DR InParanoid; A0A3B3HFX8; -.
DR Proteomes; UP000001038; Chromosome 2.
DR Bgee; ENSORLG00000027762; Expressed in blastula and 14 other cell types or tissues.
DR GO; GO:0016586; C:RSC-type complex; IBA:GO_Central.
DR GO; GO:0016514; C:SWI/SNF complex; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR CDD; cd04717; BAH_polybromo; 2.
DR CDD; cd05524; Bromo_polybromo_I; 1.
DR CDD; cd05517; Bromo_polybromo_II; 1.
DR CDD; cd05526; Bromo_polybromo_VI; 1.
DR CDD; cd21984; HMG-box_PB1; 1.
DR Gene3D; 2.30.30.490; -; 2.
DR Gene3D; 1.20.920.10; Bromodomain-like; 4.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR001025; BAH_dom.
DR InterPro; IPR043151; BAH_sf.
DR InterPro; IPR001487; Bromodomain.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR018359; Bromodomain_CS.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR037382; Rsc/polybromo.
DR PANTHER; PTHR16062:SF19; PROTEIN POLYBROMO-1; 1.
DR PANTHER; PTHR16062; SWI/SNF-RELATED; 1.
DR Pfam; PF01426; BAH; 2.
DR Pfam; PF00439; Bromodomain; 4.
DR Pfam; PF00505; HMG_box; 1.
DR PRINTS; PR00503; BROMODOMAIN.
DR SMART; SM00439; BAH; 2.
DR SMART; SM00297; BROMO; 4.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47370; Bromodomain; 4.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS51038; BAH; 2.
DR PROSITE; PS00633; BROMODOMAIN_1; 1.
DR PROSITE; PS50014; BROMODOMAIN_2; 3.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117, ECO:0000256|PROSITE-
KW ProRule:PRU00035}; DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000001038}.
FT DOMAIN 63..133
FT /note="Bromo"
FT /evidence="ECO:0000259|PROSITE:PS50014"
FT DOMAIN 198..268
FT /note="Bromo"
FT /evidence="ECO:0000259|PROSITE:PS50014"
FT DOMAIN 500..570
FT /note="Bromo"
FT /evidence="ECO:0000259|PROSITE:PS50014"
FT DOMAIN 773..891
FT /note="BAH"
FT /evidence="ECO:0000259|PROSITE:PS51038"
FT DOMAIN 959..1075
FT /note="BAH"
FT /evidence="ECO:0000259|PROSITE:PS51038"
FT DOMAIN 1169..1237
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 1169..1237
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1226..1249
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1266..1353
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1377..1397
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..23
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1283..1307
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1506 AA; 172213 MW; AB8D0D4DD355E430 CRC64;
MSASSKRRRA SSPCSSSAAS GGADLAASTP GRKRKRTSYI PPVDTIAVCH GLFHAVRDYK
DDQGRQLCEV FLRVPKRRNQ PDYYEAVSQP IDMTKIQNKL ISEEYNDVEQ LTADFQLMYN
NARSFYKPDS EEYQAACKLW DVYLQSKNEF VQPGDGEDED GDDIEENPWL SAEEEASSSL
KEVLEQLLEA IVFHTDSSGR CVSEFFQKLP SKVQYPDYYA IIKEPIDLRM IAQRIQIGHY
KSISAMTKDI DLMTKNAKTY NEQGSQIFKD ANTIKKVFIQ LKTELEHAEP TSSRMLFLSR
NRRSGQGGLL SSGTVALQYG SESEEDPVLS GRFWSFLSRI NCVKVIAILL FVCRQTQSNK
NHVLFLTCSC GDIEVKDEKI DDLGLKMVDV ACAGGDMEVK EEKIDDLGLK LVDVACADGD
MKVKEEKIDD FGLKLVDVAY ADGNIEVMDE KIDDLGPKLV DVEYAGGKIY KSTKNSEYLT
PLQQKLNELY DSVQNFTDCR GRCLSKIFHH LQIHSELPDD NAAIKKPINM ERIRSHMATC
RYQDVDALVE DFALMFNYVC MYNEPESLIY RDALVLHRVL LETRKQQGGE DSGPPAVRLL
VRELIRNLFV SVMSHQDEER RCYSDSLAKI PAVDPAAPEK PPLNFEIIQM NVERGHYRRL
DVFQEHMFEV LKKARRLHRT DSKIFEDAVE LQYFLIKTRD ELCKNGEILM STALHYTLKL
LQSDVDLEKR EKIPREIEED KKKAKEKREK NKGNPWEPNP LLKYVKECSF DNITYSVGEF
VYVEPSEVYF KPHIVCIDRL WEDSTGVMWL YGCWLKRPSE TIHHVSKTFL EKEVFKSYYY
NRVPISKVLG KCVVLSVKDY FEMQPEGFKP IDVYVCKSRQ GVKARSFKKI KVWNMPQSPV
KLVRRVVPLP VVYASRFTEP DLDKASFSHI LDIFKDVPME INGAEPGCQY FEQLCYNNMR
FKLGDCVYIQ SHGLSKPRVA RIEKLWLQNG TTFFFGPIFI HPEETEHEPT KMFYKREVFL
SHLEETLPMT CVLGKCMVSS FKEYLSCRPT EYTEEDILLC ESSYIETEKQ VKKLEGLKRF
SYSSKVVEDE IYYFRKLYEP QKEASPFLDK KIDELELKLA DMDEDECAPV TPSMPQMQSS
LSSDMDIMPY TPSQASPKVM GLSKRGAKRK MNISGYIFFS SKMRAVFKAR HPDLSFGELS
RLVGTEWRNL EASTKAEYEE CAAKLAEQQE PERPPQERAS PPAGTPVGAL MGVDELELKL
ADMEDGHDDM EDMDKDDDAP VTPSMPQMQN TPSRHHRPPS FQHQSKPSLH PCRHRSMEVT
DSPPPPPPPP HISQETASTI NSDSLPQPAA PPVYPIKTII TDRSSMREHA GRKANINCLC
PPKEAPNPEE AGSTTTPPSS FNMALFNVRS LSNKTFIIKD FIHNYNIDGL FLTETWLSTD
ASAVLTEASP PNFSFIFQPG REITLDEYPS FEHNALFLTA LLQFYASQFT DHPKQALFLL
RSFQSF
//