ID A0A3B3I797_ORYLA Unreviewed; 973 AA.
AC A0A3B3I797;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE RecName: Full=RUN domain-containing protein {ECO:0000259|PROSITE:PS50826};
GN Name=rubcn {ECO:0000313|Ensembl:ENSORLP00000039908.1};
OS Oryzias latipes (Japanese rice fish) (Japanese killifish).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae;
OC Oryzias.
OX NCBI_TaxID=8090 {ECO:0000313|Ensembl:ENSORLP00000039908.1, ECO:0000313|Proteomes:UP000001038};
RN [1] {ECO:0000313|Ensembl:ENSORLP00000039908.1, ECO:0000313|Proteomes:UP000001038}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000039908.1,
RC ECO:0000313|Proteomes:UP000001038};
RX PubMed=17554307; DOI=10.1038/nature05846;
RA Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T.,
RA Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A.,
RA Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S.,
RA Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S.,
RA Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K.,
RA Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y.;
RT "The medaka draft genome and insights into vertebrate genome evolution.";
RL Nature 447:714-719(2007).
RN [2] {ECO:0000313|Ensembl:ENSORLP00000039908.1}
RP IDENTIFICATION.
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000039908.1};
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR AlphaFoldDB; A0A3B3I797; -.
DR Ensembl; ENSORLT00000032652.1; ENSORLP00000039908.1; ENSORLG00000007296.2.
DR GeneTree; ENSGT00940000165727; -.
DR Proteomes; UP000001038; Chromosome 4.
DR Bgee; ENSORLG00000007296; Expressed in animal zygote and 14 other cell types or tissues.
DR GO; GO:0005768; C:endosome; IEA:UniProtKB-KW.
DR GO; GO:0006914; P:autophagy; IEA:UniProtKB-KW.
DR CDD; cd17686; RUN_RUBCN; 1.
DR Gene3D; 1.20.58.900; -; 1.
DR InterPro; IPR025258; RH_dom.
DR InterPro; IPR048569; RUBC_PIKBD.
DR InterPro; IPR004012; Run_dom.
DR InterPro; IPR037213; Run_dom_sf.
DR PANTHER; PTHR45971; PHOX (PX) DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR45971:SF3; RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13901; RH_dom; 1.
DR Pfam; PF21054; RUBC_PIKBD; 1.
DR Pfam; PF02759; RUN; 1.
DR SMART; SM01175; DUF4206; 1.
DR SMART; SM00593; RUN; 1.
DR SUPFAM; SSF140741; RUN domain-like; 1.
DR PROSITE; PS50826; RUN; 1.
PE 4: Predicted;
KW Autophagy {ECO:0000256|ARBA:ARBA00023006};
KW Endosome {ECO:0000256|ARBA:ARBA00022753};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Reference proteome {ECO:0000313|Proteomes:UP000001038};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..18
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 19..973
FT /note="RUN domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5017289714"
FT DOMAIN 55..192
FT /note="RUN"
FT /evidence="ECO:0000259|PROSITE:PS50826"
FT REGION 249..458
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 548..579
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 249..282
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 306..324
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 343..366
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 386..414
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 423..458
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 548..573
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 973 AA; 108590 MW; F0BFAFB1119A6587 CRC64;
MSSVLLYFSH CLISLLCGHP TFLPLCVSRK ELWKLLSSLK TTVEGLVSTN NPNVWSRYGG
LQRLHKDMNN ILSHELKNEQ VYYKRRDYWP FVWCVRYISP HLASHVEQFS NLEPVLSNGM
QSAGESYKAE RWLLHSLQAH MLSAQLKPLL RHLGHTRKYY NDDAFLLSEP HVTAMFQCLE
AVEQNNPKLL AQVDTVGLSP LKSSPCLGLL KSQSLCLLPG AGGTWRNADT APGGETLNRR
LTTSNCSLRE AVSTNHQSAS TTGSRSYDSD NTHTTSPDSS LGVPWVFVSR PEESGRLMTP
PPGSGSIPCT FLTESPSPSL AQPEDSCDGD SDDGPEYLAI GNLGHRSRRD SRGSSHSSEQ
DETKDQYLQK SSVAPAAPRR SSFSEGQRGP GKTSRGHTRS FSDTGINQKL RNESAGEGSC
GKDYSPFSSQ PSDSSINNSV CTDSHGSQHS SLQDGLFRKP SKGQSLISYL SEQDFGSCAD
LEKENAHFSI SESLIAAIEL MKCNLLRQEE ECEEEGDSDS EIQQLKQKIR LRRQQIRRSR
VPFCMSSQHH FHSTDSGGSR RSSQDSYQGL SDSGSAEEVE ECELQDGCEG QSLLAVSQSG
LSLSLASLFS DADIKRTVSS SGRSFLSSES ISPSYLQSNS AESVAMGLLR QFEGMQLPAA
SELDWLVPEH DAPQKLLPIP NSLPISPDDG EHADIYKLRI RVRGNLEWAP PRPQIIFNIH
PPPKRKIIVA KQNYRCAGCG TRIDPDYIKR LRYCEYLGRY FCQCCHENAQ AVVPGRVLRK
WDFSKYYVSN FARDLLSKIA GDPLFNPNDI NSGLYKKIKA LESVRVLRVQ LFHMKNLLKT
CRFAKEVLDQ FDSLPGHLTE DLHLYSLNDL TAVRNGELAP RMKELLKLGT MHVAGCMLCQ
AKGFVCEFCG NDKDIIFPFQ LSKCQRCEEC RACYHRSCFQ AGKDCPRCRR LAERRQRMAR
KNMEEQEDEG GGT
//