ID A0A3B5Q1L3_XIPMA Unreviewed; 1092 AA.
AC A0A3B5Q1L3;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE SubName: Full=Semaphorin 5B {ECO:0000313|Ensembl:ENSXMAP00000023906.1};
OS Xiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae;
OC Xiphophorus.
OX NCBI_TaxID=8083 {ECO:0000313|Ensembl:ENSXMAP00000023906.1, ECO:0000313|Proteomes:UP000002852};
RN [1] {ECO:0000313|Proteomes:UP000002852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JP 163 A {ECO:0000313|Proteomes:UP000002852};
RA Walter R., Schartl M., Warren W.;
RL Submitted (JAN-2012) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000002852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JP 163 A {ECO:0000313|Proteomes:UP000002852};
RX PubMed=23542700; DOI=10.1038/ng.2604;
RA Schartl M., Walter R.B., Shen Y., Garcia T., Catchen J., Amores A.,
RA Braasch I., Chalopin D., Volff J.N., Lesch K.P., Bisazza A., Minx P.,
RA Hillier L., Wilson R.K., Fuerstenberg S., Boore J., Searle S.,
RA Postlethwait J.H., Warren W.C.;
RT "The genome of the platyfish, Xiphophorus maculatus, provides insights into
RT evolutionary adaptation and several complex traits.";
RL Nat. Genet. 45:567-572(2013).
RN [3] {ECO:0000313|Ensembl:ENSXMAP00000023906.1}
RP IDENTIFICATION.
RC STRAIN=JP 163 A {ECO:0000313|Ensembl:ENSXMAP00000023906.1};
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00352}.
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DR AlphaFoldDB; A0A3B5Q1L3; -.
DR Ensembl; ENSXMAT00000040364.1; ENSXMAP00000023906.1; ENSXMAG00000000810.2.
DR GeneTree; ENSGT00940000156712; -.
DR Proteomes; UP000002852; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0030215; F:semaphorin receptor binding; IEA:InterPro.
DR GO; GO:0048468; P:cell development; IEA:UniProt.
DR GO; GO:0022008; P:neurogenesis; IEA:UniProt.
DR GO; GO:0009605; P:response to external stimulus; IEA:UniProt.
DR Gene3D; 3.30.1680.10; ligand-binding face of the semaphorins, domain 2; 1.
DR Gene3D; 2.20.100.10; Thrombospondin type-1 (TSP1) repeat; 6.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR002165; Plexin_repeat.
DR InterPro; IPR016201; PSI.
DR InterPro; IPR001627; Semap_dom.
DR InterPro; IPR036352; Semap_dom_sf.
DR InterPro; IPR027231; Semaphorin.
DR InterPro; IPR000884; TSP1_rpt.
DR InterPro; IPR036383; TSP1_rpt_sf.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR PANTHER; PTHR11036; SEMAPHORIN; 1.
DR PANTHER; PTHR11036:SF39; SEMAPHORIN-5B; 1.
DR Pfam; PF01437; PSI; 1.
DR Pfam; PF01403; Sema; 1.
DR Pfam; PF00090; TSP_1; 5.
DR PRINTS; PR01705; TSP1REPEAT.
DR SMART; SM00423; PSI; 1.
DR SMART; SM00630; Sema; 1.
DR SMART; SM00209; TSP1; 5.
DR SUPFAM; SSF103575; Plexin repeat; 1.
DR SUPFAM; SSF101912; Sema domain; 1.
DR SUPFAM; SSF82895; TSP-1 type 1 repeat; 6.
DR PROSITE; PS51004; SEMA; 1.
DR PROSITE; PS50092; TSP1; 6.
PE 4: Predicted;
KW Differentiation {ECO:0000256|ARBA:ARBA00022782};
KW Disulfide bond {ECO:0000256|ARBA:ARBA00023157};
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Neurogenesis {ECO:0000256|ARBA:ARBA00022902};
KW Reference proteome {ECO:0000313|Proteomes:UP000002852};
KW Signal {ECO:0000256|SAM:SignalP}; Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..31
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 32..1092
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5017450979"
FT TRANSMEM 970..994
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 58..508
FT /note="Sema"
FT /evidence="ECO:0000259|PROSITE:PS51004"
FT REGION 1008..1027
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1071..1092
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1072..1092
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1092 AA; 121942 MW; 5567A3A13E91279E CRC64;
MTASSQDSNP SFLAGLFLLL FHLLLFPAVC TQNSAVPTSP TTPLFDPLTQ PECTKKEHPK
VSIQALSPWI SAFSHPSVRD YSQLTLDLTR DELIVGARNY LFRLDLRNLS LIQATEWAPD
EETRKSCQSK GKTEMECQNY IRVLLVNKTE VMTCGTNAFQ PLCISREVGN ISRVVERVNG
VARCPYDPRH NSTAVVTESG ELYAATVIDF SGRDPVIYRS LGGMPPLRTA QYNSKWLNEP
HFISAYDIGL FTFFFLRENA VEHDCGKTVY SRVARVCKND IGGRFLLEDT WTTFMKARLN
CSRSGEIPFY YNELQSTFYL PEQDLIYGIF TTNVNSIAAS AVCAFNLSAI TQTFNGPFRS
QENPRSTWLP TPNPIHNFQC GTINDKGPNE GLTERSLQDA QRLYLMNDVV QPESVDPLVM
QDDVRFSNLV VDIVQGMDTL FHVMYISTEY GTILKALATP NKNLQGCYLE EMELHRTGVR
EPILSLQILH SDRSLFVGLK DRVLKIPLER CSSYKTETLC LEARDPYCGW DFRQRRCTTL
EESSNMSQWK QNITVCPLRN QTIDGGFGSW TPWHPCSNED ALDGMSSCLC RSRSCDSPAP
RCGGKTCEGP TIEVSNCSRN GGWTPWSSWG QCSTTCGTGF ELRQRSCNNP SPRHGGRVCV
GPTRDERFCN EGVSCPQPIF WTPWASWTKC STECGGGIHS RVRSCENGNT CPGCALEYKA
CNLEACPEVK RNTPWTPWMP VNVTQGGARQ EQRTRYMCRA HLADPHELQI GRRKVETRFC
PNDGTVVCDT DSLVEELLKT PVVRTAATSW SSWETWSSCS QSCAKGYRTR RRTCSGPEGK
SAPVACRGSP VEYQDCNVQA CPVKGAWSCW SPWSQCSVGC GSGHYQRTRS CSSPAPANGG
DICIGLHTEE ALCNTHTCDG GWMAWSLWSA CDDSGFQTRS RVCGAPGSAP CVGNSTQRRD
CNEIPAFTSI HLIATGVSCF LGAGLLSFLI YVYCQRFHKP SQESAVIHPT TPNHLNYKGN
TTPKNEKYTP MEFKTLNKNN LLPDERSNFY PTPLQQTNVY TTTYYPTPLG KFDYQPNSSP
SPCRTYNNSN NS
//