ID A0A3B5YUH4_WHEAT Unreviewed; 1022 AA.
AC A0A3B5YUH4;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CFC21_006156 {ECO:0000313|EMBL:KAF6988667.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TraesCS1B02G146900.2};
RN [1] {ECO:0000313|EMBL:KAF6988667.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF6988667.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [2] {ECO:0000313|EnsemblPlants:TraesCS1B02G146900.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS1B02G146900.2};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS1B02G146900.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [4] {ECO:0000313|EMBL:KAF6988667.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF6988667.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM022212; KAF6988667.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3B5YUH4; -.
DR SMR; A0A3B5YUH4; -.
DR STRING; 4565.A0A3B5YUH4; -.
DR EnsemblPlants; TraesCS1B02G146900.2; TraesCS1B02G146900.2; TraesCS1B02G146900.
DR Gramene; TraesCS1B02G146900.2; TraesCS1B02G146900.2; TraesCS1B02G146900.
DR Gramene; TraesCS1B03G0404400.2; TraesCS1B03G0404400.2.CDS; TraesCS1B03G0404400.
DR Proteomes; UP000019116; Chromosome 1B.
DR Proteomes; UP000815260; Chromosome 1B.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF140; OS05G0302300 PROTEIN; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 72..113
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 281..444
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..64
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 135..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 149..165
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1022 AA; 115599 MW; 3FE5FA7FED505461 CRC64;
MVSSSASPSP REEEGGGPCL PSLRGKKRRM RVRTASPEPA STAAPPQTHG KWHPDESNRP
EIDDAPVFTP TEECITLLHQ EFKDAIGYIT SIRPQVEKYG ICRIVPPSSW RPPCPLKEKS
FWKCTEFNTR VQQVDKLQNR EPKKKETQPR VQKKRKRRKK LRFGMSQKRR SADSADQEEK
FGFQSGSDFT LEEFQKYADM FKEQYFGMKG SDEISLFEIK QHKEMWRPSV EEIEGEYWRI
VVCPDDEVEV DYGADLDTAI FSSGFPKSSL SDGNKQDPYG LSCWNLNNLR RQPRSVLSFE
TEDISGVVVP WLYVGMCFSS FCWHVEDHFL YSLNYMHFGE QKVWYGVPGE NAVKLEDAMR
RNLPRLFEEQ PDLLHELVTQ LSPSVLKSEG IPVYRVVQNP GEFVLTLPRA YHSGFNCGFN
CAEAVNVAPV DWLPHGQCAV ELYRDQRRKT SISHDKLLLK TVQTALRQVW ANLQNCKSGQ
KEYIWLDTCG KNGMLTSAFK TRIKLEGSAR EANALLQCKK MDQDYDSTDR ECFSCFYDLH
LSAVSCQCSP NRFACLTHAN LLCSCEMDRK FVLHRYSMEE LNALVAALEG DPAAVYQWKE
YDVGLVCQSA STQQKMCFSK SAKLSGSIID VNIDCGFDGC EDLDKSAGYP KEKEVQNRCV
NLNIKEELVC SSSTSNTTGF SSSTFSALRK IDKDKMAMEL GSLQTSNPTI SSFQCTQSLS
HSSELSCPSR ISTGSTLPSK TTKELFGIET EYCVAKASCA QVSQLGKPSS SQSNEVSWPA
NLRHQVEQLD HGTVIVGKNW CNHQAIFPKG FRSRVTFYSV LDPTRICCYI SEVIDAGLLE
PLFRVAVEEF PEVYFTHTSP MQCWDSVRDR VNEEIKKQCR AGKSPALLSN DSVNGLEMFG
FLSPPIIEVI EALDPDHKCL DYWLSKHTPP LRRLLSESLM TTTVDGTNNS SIRLLGVDIA
SNESERSSFH NNSCAEETKL SRLLKKAKWP EEQELIVMNK AISGRMDNSA GLQDEMKNYV
DK
//
