ID A0A3B5ZRX4_WHEAT Unreviewed; 621 AA.
AC A0A3B5ZRX4;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CFC21_010702 {ECO:0000313|EMBL:KAF6993878.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TraesCS1D02G103100.1};
RN [1] {ECO:0000313|EMBL:KAF6993878.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF6993878.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [2] {ECO:0000313|EnsemblPlants:TraesCS1D02G103100.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS1D02G103100.1};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS1D02G103100.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [4] {ECO:0000313|EMBL:KAF6993878.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF6993878.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM022213; KAF6993878.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3B5ZRX4; -.
DR SMR; A0A3B5ZRX4; -.
DR STRING; 4565.A0A3B5ZRX4; -.
DR PaxDb; 4565-Traes_1DS_84A3B131A-1; -.
DR EnsemblPlants; TraesCS1D02G103100.1; TraesCS1D02G103100.1; TraesCS1D02G103100.
DR Gramene; TraesCAD_scaffold_032996_01G000300.1; TraesCAD_scaffold_032996_01G000300.1; TraesCAD_scaffold_032996_01G000300.
DR Gramene; TraesCS1D02G103100.1; TraesCS1D02G103100.1; TraesCS1D02G103100.
DR Gramene; TraesKAR1D01G0071810.1; cds.TraesKAR1D01G0071810.1; TraesKAR1D01G0071810.
DR Gramene; TraesPAR_scaffold_023140_01G000100.1; TraesPAR_scaffold_023140_01G000100.1; TraesPAR_scaffold_023140_01G000100.
DR Gramene; TraesROB_scaffold_089443_01G000100.1; TraesROB_scaffold_089443_01G000100.1; TraesROB_scaffold_089443_01G000100.
DR OMA; SHICFAV; -.
DR OrthoDB; 1112799at2759; -.
DR Proteomes; UP000019116; Chromosome 1D.
DR Proteomes; UP000815260; Chromosome 1D.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR PANTHER; PTHR21596:SF21; XS DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 38..78
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 108..211
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 493..620
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT COILED 258..395
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 621 AA; 71185 MW; D0AA01FF553BBF84 CRC64;
MDYTSDGDSE LEAYGSDTYA LLLSGDIKVM HDGSSYKCPF CSVGNGDYNI HELLQHALSV
GAAHDQEAKQ KVDHRALAKH LKDEPAKSHS PLLRPIIMDP QPPQHKRDEL FVWPWMGIIV
NMPSEYVGKS ANRLKEHFSC FHPVKAHHVY SKGFPTGNAI VEFGKDFGGF RNARIFENQF
EKNGYGKMGW QEKERRGSEP FGWIARADDY NAPGAIGDFL KKNGDLKTVD GVENEEKNKN
EKLVASLSSK VIEKNMHLEA LECEYQERTV SLQRMMEQRE HQLQSYSQEL QKMRQCSVEH
TQKIVDENKK LRFDLQSMTH ELDARSKELD ELAAQTDCDR RKLELEKQRN ATKSNHLMLA
EMEYQKANEN VRKLLEQQQK EKETALNNAK KLEEQFHVKH NLQLEIKHLT GKLEVIKLTP
GNETSETGKR IAELTEELQD KIDEMEYTEN YNQGLILQEK KAAVELQEAR KFVLDALQDL
GGQTSDKAHI GIRMMGELDS KAFLNVCRKY FPNDDAEVGS VEICSKWQNE IKNPEWRPFN
GKELEVINED DMKLKELKEV YGEEAYAAVV TALMELNGSG SSSGSRVPFP ELWNQREGRK
AKSKEAVQHA IKLFKASKRR R
//
