ID A0A3B6C1S4_WHEAT Unreviewed; 80 AA.
AC A0A3B6C1S4;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=CSD domain-containing protein {ECO:0000259|PROSITE:PS51857};
GN ORFNames=CFC21_022231 {ECO:0000313|EMBL:KAF7007283.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TraesCS2B02G169500.1.cds1};
RN [1] {ECO:0000313|EMBL:KAF7007283.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7007283.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [2] {ECO:0000313|EnsemblPlants:TraesCS2B02G169500.1.cds1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS2B02G169500.1.cds1};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS2B02G169500.1.cds1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [4] {ECO:0000313|EMBL:KAF7007283.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7007283.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM022215; KAF7007283.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3B6C1S4; -.
DR SMR; A0A3B6C1S4; -.
DR STRING; 4565.A0A3B6C1S4; -.
DR PaxDb; 4565-Traes_2BS_E2EDA1CE91-1; -.
DR EnsemblPlants; TraesCS2B02G169500.1; TraesCS2B02G169500.1.cds1; TraesCS2B02G169500.
DR Gramene; TraesCAD_scaffold_002202_01G000200.1; TraesCAD_scaffold_002202_01G000200.1; TraesCAD_scaffold_002202_01G000200.
DR Gramene; TraesCS2B02G169500.1; TraesCS2B02G169500.1.cds1; TraesCS2B02G169500.
DR Gramene; TraesCS2B03G0413000.1; TraesCS2B03G0413000.1.CDS1; TraesCS2B03G0413000.
DR Gramene; TraesPAR_scaffold_066120_01G000100.1; TraesPAR_scaffold_066120_01G000100.1; TraesPAR_scaffold_066120_01G000100.
DR Gramene; TraesRN2B0100420600.1; TraesRN2B0100420600.1; TraesRN2B0100420600.
DR Gramene; TraesROB_scaffold_003545_01G000100.1; TraesROB_scaffold_003545_01G000100.1; TraesROB_scaffold_003545_01G000100.
DR Gramene; TraesWEE_scaffold_005130_01G000200.1; TraesWEE_scaffold_005130_01G000200.1; TraesWEE_scaffold_005130_01G000200.
DR OMA; SIQMEGF; -.
DR Proteomes; UP000019116; Chromosome 2B.
DR Proteomes; UP000815260; Chromosome 2B.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003676; F:nucleic acid binding; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR CDD; cd04458; CSP_CDS; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR012156; Cold_shock_CspA.
DR InterPro; IPR011129; CSD.
DR InterPro; IPR019844; CSD_1.
DR InterPro; IPR002059; CSP_DNA-bd.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR PANTHER; PTHR11544; COLD SHOCK DOMAIN CONTAINING PROTEINS; 1.
DR PANTHER; PTHR11544:SF60; LD37574P; 1.
DR Pfam; PF00313; CSD; 1.
DR PIRSF; PIRSF002599; Cold_shock_A; 1.
DR PRINTS; PR00050; COLDSHOCK.
DR SMART; SM00357; CSP; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00352; CSD_1; 1.
DR PROSITE; PS51857; CSD_2; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022771};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116};
KW Zinc {ECO:0000256|ARBA:ARBA00022771};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 2..67
FT /note="CSD"
FT /evidence="ECO:0000259|PROSITE:PS51857"
SQ SEQUENCE 80 AA; 8926 MW; 90530E582C0EFB2E CRC64;
MQITGVVKWF NETKGFGFIT PDDGSKDVFV HFTAIQSHGF KTLAEGQRVE FEIQDGQKGP
SAVNVKPLEV EEDKRISSKL
//
