ID A0A3B6QI87_WHEAT Unreviewed; 856 AA.
AC A0A3B6QI87;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=MIF4G domain-containing protein {ECO:0000259|SMART:SM00543};
GN ORFNames=CFC21_092918 {ECO:0000313|EMBL:KAF7090103.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TraesCS6D02G213600.2};
RN [1] {ECO:0000313|EMBL:KAF7090103.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7090103.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [2] {ECO:0000313|EnsemblPlants:TraesCS6D02G213600.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS6D02G213600.2};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS6D02G213600.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [4] {ECO:0000313|EMBL:KAF7090103.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7090103.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; CM022228; KAF7090103.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3B6QI87; -.
DR PaxDb; 4565-Traes_6DL_19EBEA68F-1; -.
DR EnsemblPlants; TraesCS6D02G213600.2; TraesCS6D02G213600.2; TraesCS6D02G213600.
DR Gramene; TraesCS6D02G213600.2; TraesCS6D02G213600.2; TraesCS6D02G213600.
DR Gramene; TraesCS6D03G0529000.1; TraesCS6D03G0529000.1.CDS; TraesCS6D03G0529000.
DR Proteomes; UP000019116; Chromosome 6D.
DR Proteomes; UP000815260; Chromosome 6D.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR Gene3D; 1.25.40.180; -; 4.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR InterPro; IPR039762; Nmd2/UPF2.
DR InterPro; IPR007193; Upf2/Nmd2_C.
DR PANTHER; PTHR12839; NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2; 1.
DR PANTHER; PTHR12839:SF7; REGULATOR OF NONSENSE TRANSCRIPTS 2; 1.
DR Pfam; PF02854; MIF4G; 3.
DR Pfam; PF04050; Upf2; 1.
DR SMART; SM00543; MIF4G; 2.
DR SUPFAM; SSF48371; ARM repeat; 2.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116}.
FT DOMAIN 198..386
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 401..545
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 47..80
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 112..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 563..743
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 797..829
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 54..71
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 112..132
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 147..188
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 563..594
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 621..639
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 640..657
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 658..701
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..826
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 856 AA; 96292 MW; FF08AAB2C66120FD CRC64;
MEAENAKVLS AKGELSDENT ASYEKLRKSF DQLLRGVSSL AEAIDLQPPV MPDDGNTTRV
TTGTDVTPSS GKEPSVLEPI WDDDDTKTFY ESLPDLRAFV PAVLLGEAEQ KLNEQHAKGR
EQSSESNAEQ ETEVHDNAQT SSATEDQLEG KADDVAKDSE EKEKDKGKEA EKSKEKDLDR
KTEKDKEKVR ALDGGSLDNL LQRLPGCVSR DLIDQLTVEF CYLNSKASRK KLVRALFSVP
RTSLELLPYY SRMIATLSSC MKDVPTMLLP MLEEEFNFLI NKKDQINIET KIKNIRFIGE
LCKFKIAPAA LVFSCLKACL DDFSHHNIDV ACNLLETCGR FLYRSPETTI RMANMLEILM
RLKNVKNLDP RHSTLVENAY YLCKPPERSA RVSKVRPPLY QYIRKLLFSD LDKSSVEHVL
RQLRKLPWVE CQQYLVKCFL KVHKGKYSQV HLIALLTAGL SRYHDDFAVA VVDEQDVLDP
PEDCFRIRLI ITLLQTCGHY FTRGSSKRKL DKFLLHFQRY IIMKGPLPLD IEFDIQDLFA
ELRPNMTRYS SIDELNSALA ELEEHERAAS VEKPESERHS DNESQKRQPH DDGRGSANGA
EGNGKDHGEG ADSESYSDSG SIGGHEDEED LLSEEKSNDA SENEGDDEDD GMPVGSDEDE
GVEVRQKVVQ VDPKEQEDFD RELKALLQES LESRKSEVRS RSSLNMKVPM NVLEGSKDAR
AVESESGEET VDEEGGNAGG GSKVRVKVLM KKGHKQQTKQ MFVPGDCSLV QSTKQQEAAE
LEEKQNIKRR ILEYNEREEE EMNGGSSQMG NWGQGGSNTG SSIRSGGRGN WDGWIRGGAR
RHHAAGGFYQ GYGRRR
//
