ID A0A3B6RGR2_WHEAT Unreviewed; 629 AA.
AC A0A3B6RGR2;
DT 05-DEC-2018, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE RecName: Full=Factor of DNA methylation 1-5/IDN2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CFC21_098076 {ECO:0000313|EMBL:KAF7096070.1};
OS Triticum aestivum (Wheat).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX NCBI_TaxID=4565 {ECO:0000313|EnsemblPlants:TraesCS7A02G302800.1};
RN [1] {ECO:0000313|EMBL:KAF7096070.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7096070.1};
RX PubMed=29069494;
RA Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT "The first near-complete assembly of the hexaploid bread wheat genome,
RT Triticum aestivum.";
RL Gigascience 6:1-7(2017).
RN [2] {ECO:0000313|EnsemblPlants:TraesCS7A02G302800.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chinese Spring
RC {ECO:0000313|EnsemblPlants:TraesCS7A02G302800.1};
RX PubMed=30115783; DOI=10.1126/science.aar7191;
RG International wheat genome sequencing consortium (IWGSC);
RT "Shifting the limits in wheat research and breeding using a fully annotated
RT reference genome.";
RL Science 361:EAAR7191-EAAR7191(2018).
RN [3] {ECO:0000313|EnsemblPlants:TraesCS7A02G302800.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (OCT-2018) to UniProtKB.
RN [4] {ECO:0000313|EMBL:KAF7096070.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaf {ECO:0000313|EMBL:KAF7096070.1};
RA Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT aestivum) genome.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM022229; KAF7096070.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3B6RGR2; -.
DR SMR; A0A3B6RGR2; -.
DR STRING; 4565.A0A3B6RGR2; -.
DR PaxDb; 4565-Traes_7AL_B1F81BA1B-1; -.
DR EnsemblPlants; TraesCS7A02G302800.1; TraesCS7A02G302800.1; TraesCS7A02G302800.
DR Gramene; TraesCS7A02G302800.1; TraesCS7A02G302800.1; TraesCS7A02G302800.
DR Gramene; TraesCS7A03G0748100.1; TraesCS7A03G0748100.1.CDS; TraesCS7A03G0748100.
DR Gramene; TraesKAR7A01G0273520.1; cds.TraesKAR7A01G0273520.1; TraesKAR7A01G0273520.
DR OMA; KDANWHP; -.
DR OrthoDB; 1112799at2759; -.
DR Proteomes; UP000019116; Chromosome 7A.
DR Proteomes; UP000815260; Chromosome 7A.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF84; FACTOR OF DNA METHYLATION 1; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000019116};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 47..87
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 120..222
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 500..628
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT COILED 269..357
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 386..461
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 629 AA; 72020 MW; 5EACF7C894E82915 CRC64;
MGSHMECSSD ESSELSDADI DDYAEKAYTD LKSGKLVARF GADRFRCPFC PGKKKQDYRY
NELLQHAIGV GASNRAAKVK ANHQALASHL KTDHADAAGS LPPRQAEALI NPPKPVQDQE
LFVWPWMGIL ANVPVEQTQR GGAIVMQQLA GYKPIRFNAV HCPDGGYTGF AIVRFNKDWI
GFKDALGFHN TYKSHHLGKT DWEANKSDKY MFAWLAKEED YKADDPVGKF LSENGDLKTV
AELQQEMSRK TDTLITSLTS QISAKSKYLM ELECKCNQMD LALQRAMEDN DSLDQRYNEE
MRKMQSTARE HSLKIFHETD QLRKQLDEKE NDIRRRSKQL SEIVAQTDME RRKLENERKK
NDGQNDSLNM ARIEQEKANE GVRLLVEKHK KEKEAALNKI LLLEKQLDEK HQLELDIQQL
RGKLEVVKHM EGEGVDVKKR TEELNKDLQD RIDAMEDLEE LNQALIIKER MTNDELQDAK
KELISGLVDL LGPRSNIGIR RMGQVDEKPF IEACKPKYGA EADTKALEFC SMWQDNLRDA
NWHPFKIVTT GEKSEQIIDE GDEKLVGLKE ELGEEVYKAV TTALVEMNEY NASGSYVVSE
LWNNKDNRKA SMGEVVEHIL KQWKAKRKR
//
