ID A0A3D8YFE9_9BACT Unreviewed; 472 AA.
AC A0A3D8YFE9;
DT 16-JAN-2019, integrated into UniProtKB/TrEMBL.
DT 16-JAN-2019, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE SubName: Full=tRNA nucleotidyltransferase {ECO:0000313|EMBL:REA62935.1};
GN ORFNames=DSL64_07460 {ECO:0000313|EMBL:REA62935.1};
OS Dyadobacter luteus.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Spirosomataceae;
OC Dyadobacter.
OX NCBI_TaxID=2259619 {ECO:0000313|EMBL:REA62935.1, ECO:0000313|Proteomes:UP000256373};
RN [1] {ECO:0000313|EMBL:REA62935.1, ECO:0000313|Proteomes:UP000256373}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RS19 {ECO:0000313|EMBL:REA62935.1,
RC ECO:0000313|Proteomes:UP000256373};
RA Chen L.;
RT "Dyadobacter roseus sp. nov., isolated from rose rhizosphere soil.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A)
CC polymerase family. {ECO:0000256|RuleBase:RU003953}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:REA62935.1}.
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DR EMBL; QNUL01000004; REA62935.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3D8YFE9; -.
DR OrthoDB; 9805698at2; -.
DR Proteomes; UP000256373; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0031123; P:RNA 3'-end processing; IEA:UniProt.
DR GO; GO:0042245; P:RNA repair; IEA:UniProtKB-KW.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd00077; HDc; 1.
DR CDD; cd05398; NT_ClassII-CCAase; 1.
DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 1.
DR Gene3D; 1.10.3090.10; cca-adding enzyme, domain 2; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR002646; PolA_pol_head_dom.
DR InterPro; IPR032828; PolyA_RNA-bd.
DR NCBIfam; TIGR00277; HDIG; 1.
DR PANTHER; PTHR47545; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR PANTHER; PTHR47545:SF1; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF01743; PolyA_pol; 1.
DR Pfam; PF12627; PolyA_pol_RNAbd; 1.
DR SUPFAM; SSF81301; Nucleotidyltransferase; 1.
DR SUPFAM; SSF81891; Poly A polymerase C-terminal region-like; 1.
DR PROSITE; PS51831; HD; 1.
PE 3: Inferred from homology;
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000256373};
KW RNA repair {ECO:0000256|ARBA:ARBA00022800};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU003953};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU003953};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694}.
FT DOMAIN 258..369
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
SQ SEQUENCE 472 AA; 53478 MW; 9F5EBF9CA0639247 CRC64;
MNFKEQLVQY PILEVVAQAA SRLGVDVYII GGFVRDLILK RGSKDIDIVA VGSGIELAEL
VASELGPDVH VSIYKTFGTA QIRQGELEVE FVGARKESYR SDSRKPAVED GTLQDDQNRR
DFTINAMGIS LNKSTFGDLV DPFEGVKSLR KRIIRTPLAP DITFSDDPLR MMRAIRFASQ
LNFDIEPDTF DAIIAMKDRI SIVSMERVSD ELNKIILSPT PSYGFKLLYH AGILSIIFPE
LVELQGVETR DGKGHKDNFY HTLQVLDNVS EHTDDLWLRW AAILHDIAKP ATKKFDKKVG
WSFHNHEEIG ARMVPSIFRR MKLPLNEKMK FVKKLVRLHL RPIVLSKEEI TDSAMRRLLV
EAGEDIEALM KLCRADITSK NPEKVKRFLH NFDIVEQKLK DLEERDALRN FQPVITGEII
IEAFGIKPSK EVGIIKESVR EAILEGIVPN EYEPAFALMI EEGKKMGLVP VV
//
