ID A0A3L6PZM4_PANMI Unreviewed; 1415 AA.
AC A0A3L6PZM4;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=Reverse transcriptase {ECO:0008006|Google:ProtNLM};
GN ORFNames=C2845_PM16G03730 {ECO:0000313|EMBL:RLM65969.1};
OS Panicum miliaceum (Proso millet) (Broomcorn millet).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Panicinae; Panicum.
OX NCBI_TaxID=4540 {ECO:0000313|EMBL:RLM65969.1, ECO:0000313|Proteomes:UP000275267};
RN [1] {ECO:0000313|Proteomes:UP000275267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=30683860; DOI=10.1038/s41467-019-08409-5;
RA Zou C., Miki D., Li D., Tang Q., Xiao L., Rajput S., Deng P., Jia W.,
RA Huang R., Zhang M., Sun Y., Hu J., Fu X., Schnable P.S., Li F., Zhang H.,
RA Feng B., Zhu X., Liu R., Schnable J.C., Zhu J.-K., Zhang H.;
RT "The genome of broomcorn millet.";
RL Nat. Commun. 10:436-436(2019).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RLM65969.1}.
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DR EMBL; PQIB02000015; RLM65969.1; -; Genomic_DNA.
DR STRING; 4540.A0A3L6PZM4; -.
DR Proteomes; UP000275267; Chromosome 16.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000275267}.
FT DOMAIN 509..688
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1026..1188
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 1331..1363
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1415 AA; 159045 MW; DB68AE3EF0866CE8 CRC64;
MPRPSPPSLL TARHPPAPSR APVSTTDRPP RFQKLDFPKY DGTKDPLIFI NRCESYFHQQ
RIMEEEKVWM ASYNLDDEAQ LWYMQVQTDE GTPSWRRFTE LLNLRFGPPL SSAPLFELAD
CRRTGTVAEY QARFQALLPR AGHLDETQRV QLFTGGLLPP LSLAVQVLNP QSLAAAMSLA
RQMELMEQYS VAPPKAAPRG ILPAPAPRPA PTFQPVARPT APTVTVEGRP VKRLTQAEQE
ERRRLGLCYN CDERFGRGHN RVCKRLFLLD CALDDDTDDD VAAGDATPGT EAPVFSLHVV
AGVPTCDTMQ IKVSLGATSF IALLDSGSTH NFIAEDAALR TGLPIQPRPH LTATVANGER
VACPGVIRRA PISIDNTLFH VDLFVMPLAG YDMVLGTQWM ATLGKIVWDF TERSMSFQRH
GHTIRWAGVA TPSTAALRAT ATSEAPAPLL DGLLEAFEDV FAEPTGLPPK RGRDHSIILK
PDAQPVAVRP YRYPAAHKDE LERQCAAMLQ QGIIRRSDSA FSSPVLLVKK ADGSWRFCVD
YRALNALTAK DAFPIPVVDE LLDELHGARF FTKLDLRSVY HQVRMRPEDA HKTAFRTHDG
LYEFLVMPFG LCNAPATFQA LMNNVLRPFL RRFVLVFFDD ILIYSTTWAD HLRHLRAVLS
ELRHHRLFIK RAKCAFGVIS VAYLGHVISA KGVAMDPAKV QAIHDWPVPR SARAVCGFLG
LAGYYRKFVH NYGTVAAPLT ALLKKDGFSW TAAATAAFDA LKAAVTSAPV LAMPDFAKPF
VVECDASSHG FGAVLVQEGH PIAFFSRPIA PRHQSLAAYE RELIGLVQAV RHWRPYLWGR
RFVVKTDHYS LKYLLDQRLA MIPQHHWVGK LLGFDFSVEY KPGTANAVAD ALSRRDTTEA
GVVLALSAPR FDFVARLRQA QLTDPVLVAI QDDVRAGSRG APWAIVDDMV QYAGRLYIPP
ASPLVQEILA ATHEEGHEGV QRTLHRLRRD FHFPNMKQVV QDYVRGCVIC QRYKSEHLHP
TGLLLPLPVP QGVWTDIALD FVEALPRVRG KSVILTVVDR FSKYCHFIPL AHPYSAESVA
QAFFADIVRL HGIPQSMVSD RDPMFTSTFW RELMRLMGTK LHMTTAFHPQ SDGQSEAANR
VIIMYLRCLT GDRPRQWLRW LPWAEFVFNT AYQSSLRDTP FRVVYGREPP SIRSYEPGDT
RVAAVARNME EREEFLADIR YRLEQAQAVH KHHYDKNHRQ VVYHVGDWVL LRLRQRAASS
LPQATTGKLK PRFYGPYMVI ELINEVAVRL ALPVGARLHD VFHIGLLKKF HGPPPEAPPP
LPTIHHGAVA PEPERAVRFR LARGVRQVLV HWKGESAASA TWEDVDAFRD KFPAFQLEDE
LALEGGRDVM WGQVYTRRRR ARDVRRDAER AECVA
//
