ID A0A3M0KFL3_HIRRU Unreviewed; 563 AA.
AC A0A3M0KFL3;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 24-JAN-2024, entry version 14.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=DUI87_13667 {ECO:0000313|EMBL:RMC09880.1};
OS Hirundo rustica rustica.
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae;
OC Hirundo.
OX NCBI_TaxID=333673 {ECO:0000313|EMBL:RMC09880.1, ECO:0000313|Proteomes:UP000269221};
RN [1] {ECO:0000313|EMBL:RMC09880.1, ECO:0000313|Proteomes:UP000269221}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Chelidonia {ECO:0000313|EMBL:RMC09880.1};
RC TISSUE=Blood {ECO:0000313|EMBL:RMC09880.1};
RA Formenti G., Chiara M., Poveda L., Francoijs K.-J., Bonisoli-Alquati A.,
RA Canova L., Gianfranceschi L., Horner D.S., Saino N.;
RT "A high quality draft genome assembly of the barn swallow (H. rustica
RT rustica).";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RMC09880.1}.
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DR EMBL; QRBI01000113; RMC09880.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3M0KFL3; -.
DR STRING; 333673.A0A3M0KFL3; -.
DR Proteomes; UP000269221; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016032; P:viral process; IEA:InterPro.
DR Gene3D; 1.10.1200.30; -; 1.
DR Gene3D; 1.10.375.10; Human Immunodeficiency Virus Type 1 Capsid Protein; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR045345; Gag_p24_C.
DR InterPro; IPR008916; Retrov_capsid_C.
DR InterPro; IPR008919; Retrov_capsid_N.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR40389; ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN-RELATED; 1.
DR PANTHER; PTHR40389:SF3; IGE-BINDING PROTEIN; 1.
DR Pfam; PF00607; Gag_p24; 1.
DR Pfam; PF19317; Gag_p24_C; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF47353; Retrovirus capsid dimerization domain-like; 1.
DR SUPFAM; SSF47943; Retrovirus capsid protein, N-terminal core domain; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000269221};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 483..497
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 107..159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 544..563
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 119..156
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 563 AA; 61280 MW; 767C030C1764EF35 CRC64;
MDRQAAYDLF ASLLKRRGVK GLDLDKDLPS LLRHAASYGF FANPHAVHEL AEWRKYGDKL
WELVLDDDKS AKKMSKFWKI VQNELLKCEA EKQAVVAAKE AQGKNKIYYG HPSDPNPPGV
AFVDLPPPQP PPTAPPLPSN ADPLSPTPPD PPATEPFPGA LSDLAEAMAQ GRRETWAALA
QQGWQREDPE LAAAAQEQID TCAFPVIFQP NPQGGQRAEL VNLDWKLLSQ LRATVASYGV
TSEPAKQMLE FLFNANLLLP SDIRGISKLI YTPHQRLLFE ARWREEAAVS AALPRPQGDP
LTGLTMNELM GQGPFHRIEA QVALGQEKLR EAMAVARRAM GKIRAPGGTP IYMGIKQGRD
EPLGSFVDKI IEALSKAGIA DHMQDALVKQ CILQNGNANT RSLIAAAPGH WNVQDLLDKA
ESMPSGTQVF MVEALQKIGE GLQQQAQAFR EQTASAHTQV LAALAPLQAV TARQRSNTGG
RMKCFHCGKL GHIRRECNAT GIWCEKCRSN THNSVACAQS GSGNCKTSAK LGCAKTQVAP
AALPTTSSCQ QPPAASDWTW QPQ
//
