ID A0A3M9NGJ4_9BACT Unreviewed; 473 AA.
AC A0A3M9NGJ4;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE SubName: Full=HD domain-containing protein {ECO:0000313|EMBL:RNI36575.1};
GN ORFNames=EFY79_09610 {ECO:0000313|EMBL:RNI36575.1};
OS Hanamia caeni.
OC Bacteria; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae;
OC Hanamia.
OX NCBI_TaxID=2294116 {ECO:0000313|EMBL:RNI36575.1, ECO:0000313|Proteomes:UP000267223};
RN [1] {ECO:0000313|EMBL:RNI36575.1, ECO:0000313|Proteomes:UP000267223}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BO-59 {ECO:0000313|EMBL:RNI36575.1,
RC ECO:0000313|Proteomes:UP000267223};
RA Im W.T.;
RT "Draft genome sequence of Ferruginibacter sp. BO-59.";
RL Submitted (NOV-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A)
CC polymerase family. {ECO:0000256|RuleBase:RU003953}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RNI36575.1}.
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DR EMBL; RJJR01000007; RNI36575.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3M9NGJ4; -.
DR OrthoDB; 9805698at2; -.
DR Proteomes; UP000267223; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0031123; P:RNA 3'-end processing; IEA:UniProt.
DR GO; GO:0042245; P:RNA repair; IEA:UniProtKB-KW.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd00077; HDc; 1.
DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 1.
DR Gene3D; 1.10.3090.10; cca-adding enzyme, domain 2; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR002646; PolA_pol_head_dom.
DR InterPro; IPR032828; PolyA_RNA-bd.
DR NCBIfam; TIGR00277; HDIG; 1.
DR PANTHER; PTHR47545; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR PANTHER; PTHR47545:SF1; MULTIFUNCTIONAL CCA PROTEIN; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF01743; PolyA_pol; 1.
DR Pfam; PF12627; PolyA_pol_RNAbd; 1.
DR SMART; SM00471; HDc; 1.
DR SUPFAM; SSF81301; Nucleotidyltransferase; 1.
DR SUPFAM; SSF81891; Poly A polymerase C-terminal region-like; 1.
PE 3: Inferred from homology;
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000267223};
KW RNA repair {ECO:0000256|ARBA:ARBA00022800};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU003953};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU003953};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694}.
FT DOMAIN 258..382
FT /note="HD/PDEase"
FT /evidence="ECO:0000259|SMART:SM00471"
SQ SEQUENCE 473 AA; 53905 MW; 727A264FC935E549 CRC64;
MKIRCSSEEI FIFQKISDAA SELSMAAFII GGFVRDKILN RYSKDADIVC DGDGIQLAQL
AALQFDPKPN LSVFKNFGTA QLKLFIKGNT FEIEFVGARK ESYNRNSRKP DVLPGTLEED
RLRRDFTMNT IAAKLHRNNF LEIVDPLHGL EDIKNKIIRT PLPPAQTFID DPLRMMRAIR
FAAQLHFTIE QETFQAIKEN ASRIKIVSGE RIIDEMNKIV MTTKPSVGFD LLYISGLLEI
IFPQMVALVG AEFIDGKGHK DNFYHTLQVL DNIAPHTNDL WLRWAAILHD IAKPATKKFE
EGHGWTFHGH EVVGGRMVPK IFAKLKLPLN EKMKFVRKMV ELHLRPISLT KENITDSAIR
RLLFDAGDDI ENLMTLCKAD ITSKNKQKVQ RYLANFEMVE KRLKEVEESD HLRNWQPPIT
GEIIMKEFNL PPSRIVGEIK NAVREAILDG EIANEFNAAF AYMKKVAKNL GVS
//
