ID A0A3N7F9L4_POPTR Unreviewed; 1139 AA.
AC A0A3N7F9L4;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE RecName: Full=TIR domain-containing protein {ECO:0000259|PROSITE:PS50104};
GN ORFNames=POPTR_T002066 {ECO:0000313|EMBL:RQO93049.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:RQO93049.1};
RN [1] {ECO:0000313|EMBL:RQO93049.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Nisqually-1 {ECO:0000313|EMBL:RQO93049.1};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
RN [2] {ECO:0000313|EMBL:RQO93049.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Nisqually-1 {ECO:0000313|EMBL:RQO93049.1};
RA Tuskan G., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U.,
RA Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L.,
RA Aerts A., Bhalerao R., Bhalerao R., Blaudez D., Boerjan W., Brun A.,
RA Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J.,
RA Chen G., Cooper D., Coutinho P., Couturier J., Covert S., Cronk Q.,
RA Cunningham R., Davis J., Degroeve S., Dejardin A., Depamphilis C.,
RA Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B.,
RA Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L.,
RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R.,
RA Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R.,
RA Joshi C., Kangasjarvi J., Karlsson J., Kelleher C., Kirkpatrick R.,
RA Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.,
RA Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C.,
RA Nelson D., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G.,
RA Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P.,
RA Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J.,
RA Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.,
RA Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G.,
RA Yin T., Douglas C., Marra M., Sandberg G., Van De Peer Y., Rokhsar D.;
RT "WGS assembly of Populus trichocarpa.";
RL Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; KZ623338; RQO93049.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3N7F9L4; -.
DR EnsemblPlants; Potri.T002066.2.v4.1; Potri.T002066.2.v4.1; Potri.T002066.v4.1.
DR Gramene; Potri.T002066.2.v4.1; Potri.T002066.2.v4.1; Potri.T002066.v4.1.
DR OrthoDB; 2916133at2759; -.
DR GO; GO:0043531; F:ADP binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:InterPro.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR Gene3D; 1.10.8.430; Helical domain of apoptotic protease-activating factors; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 2.
DR Gene3D; 3.40.50.10140; Toll/interleukin-1 receptor homology (TIR) domain; 1.
DR InterPro; IPR042197; Apaf_helical.
DR InterPro; IPR044974; Disease_R_plants.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR002182; NB-ARC.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000157; TIR_dom.
DR InterPro; IPR035897; Toll_tir_struct_dom_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR11017:SF479; DISEASE RESISTANCE PROTEIN CHL1; 1.
DR PANTHER; PTHR11017; LEUCINE-RICH REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF00931; NB-ARC; 1.
DR Pfam; PF01582; TIR; 1.
DR PRINTS; PR00364; DISEASERSIST.
DR SMART; SM00255; TIR; 1.
DR SUPFAM; SSF52058; L domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF52200; Toll/Interleukin receptor TIR domain; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50104; TIR; 1.
PE 4: Predicted;
FT DOMAIN 13..181
FT /note="TIR"
FT /evidence="ECO:0000259|PROSITE:PS50104"
SQ SEQUENCE 1139 AA; 129311 MW; E993A1DBF5CAA769 CRC64;
MTEPESSRSI SLGAYDVFLS FRGEDTRKTF TDHLYTALVQ AGIHTFRDDD ELPRGEEISD
HLLRAVQESK ISIVVFSKGY ASSRWCLNEL VEILKCKNRK TGQIVLPIFY DIDPSDVRKQ
NGSFAEAFVK HEERSEEKLV KEWRKALEEA GNLSGRNLND MANGHEAKFI KEIIKDVLNK
LDPKYLYVPE HLVGMDRLAH NIFDFLSTAT DDVRIVGIHG MPGIGKTTIA KVVFNQLCYG
FEGSCFLSNI NETPKKLTGL VRLQTQLLRD ILKQDVANFE CVDRGKVLIN ERIRRKRVLF
VADDVARQDQ LNALMGERSW FGPGSRVIIT TRDSNLLRKA DQTYQIEELT RDQSLQLFSW
HAFKHSKPAE DYIELSKDVV DYCGGLPLAL EVMGACLYGK NRGGWKSVID KLRRIPNHDI
QGKLRISYDS LDGEELRNAF LDIACFFIDR KKRYVAKVLG ARCGYNPEVD LETLRGRSLI
KVNAIGKITM HDLLRDMGRE VVRETSPKEP GKRTRIWNQE DAWNVLEQQK GTDVVEGLAL
DVRASEAKSL STRSFAKMKR LNLLQINGAH LTGSFKLLSK ELMWICWLQC PLKYFSSDFT
LDNLAVLDMQ YSNLKELWKG QKILNRLKIL NLNHSKNLIK TPNLHSSSLE KLKLKGCSSL
VEVHQSIENL TSLVFLNLEG CWNLKILPES IGNVKSLETL NISGCSQLEK LPECMGDMES
LTELLADGIE NEQFLTSIGQ LKHVRRLSLC GYSSAPPSSS LNSAGVLNWK QWLPTSFGWR
LVNHLELSNG GLSDRTTNCV DFSGLSALEV LDLTRNKFSS LPSGIGFLPK LRRLFVLACE
YLVSILDLPS SLDCLVASHC KSLKRVRIPI EQKKDLYIEL HESHSLEEIQ GIEGRSNSFW
YICSNQFSHS PKKLQKSVVE VMCNGRHPYR ISPIRGEMPN WMSCSGEGCS LSFHIPSVFQ
GLVVWFICPL EPVTIEFDSR IIIIIRNKSN GIQLFEDKRT PGTDMFFIEG FIRYISISEM
GMEDYCGDDE LELCIYSEPT EHAVRRLPFY PVHIKECGAH VIAKKLNSFE ESAMGRATVM
PSPSLYHLLP HPHCGSITAS TPKQWSNYLF AKLQEYNLSL TFHGNVQRSS PVTYCFISW
//
