ID A0A3N7FNX8_POPTR Unreviewed; 993 AA.
AC A0A3N7FNX8;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 27-MAR-2024, entry version 14.
DE RecName: Full=XS domain-containing protein {ECO:0000259|Pfam:PF03468};
GN ORFNames=POPTR_010G235700 {ECO:0000313|EMBL:RQO97147.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:RQO97147.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:RQO97147.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
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DR EMBL; CM009299; RQO97147.1; -; Genomic_DNA.
DR RefSeq; XP_006378803.1; XM_006378741.1.
DR AlphaFoldDB; A0A3N7FNX8; -.
DR STRING; 3694.A0A3N7FNX8; -.
DR GeneID; 18102772; -.
DR KEGG; pop:18102772; -.
DR InParanoid; A0A3N7FNX8; -.
DR OrthoDB; 451317at2759; -.
DR Proteomes; UP000006729; Chromosome 10.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:InterPro.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR PANTHER; PTHR46619; RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED; 1.
DR PANTHER; PTHR46619:SF4; XS DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR Pfam; PF03468; XS; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT DOMAIN 829..958
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT REGION 1..108
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 120..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 459..482
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..20
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..44
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 51..84
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 120..156
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 993 AA; 114473 MW; 4A7ABE61A934C4C0 CRC64;
MQSRKPEDYI AQSPSAKTRN QHRTEVGHES HPAPRRHAVD RSPRVQQRRS LSPRRKVEGT
RKVVHGEGRS SSTERRDSSW HLGAGRTEKV RSGSPQYAQE RKKPRFDEGV VHRKYRQVEE
HVDGKSNRLK RGYGYDHHAA SSRASKEKDY RDNRGVGIDG HGMMGQKSVP EEDGMIRGSY
RVPRDLVPNS NYGDTGSHIQ SMSRNMDSGH FDDEELQFRE TIPSDKIPAR RFYEEGEKPM
FHSRYVPYTR MSAPHSKDLE SAPRYKDFAG SSSGFSRSEF PGSYREGMPL AASDEYPRSS
IKHTEPTNFN TYRERSVMDI RDYEASKRIM TSYPQGAYNP KRPSHDHYFY SKSQEIVDDN
HAYPSDDVHR MMSPPSPLNY EHAQTDFEHR EFSRMSMHHV RDRTDHTDGS FINVRRSTVF
DHPTIQRQAP MENLDTGRIQ NTSKHNVEYL GSAYTQVDRG QGELQDNRRS HSGVTQDRQV
PHLRPNYGFG RDAGPQFQKE ILHDPPMPIY DMEMKRFAAQ RQRMRGELAS YEPPDKAFNR
NYVMEEEINR HDRKYIVEED INRHDTRNIV SNKRNLPQEF EDLYESGEEW VDEDTGALHV
SRTRRFDQSA YRNAKRTYDR DNFGDSASED WLSSQDSSVH AQRDLIRDYK PGAKYMKGHP
RSGPLSWYNS HQTDKKSVHR QHRIWKRNDD YGNDANINDD DQPEDWVNLG EAEPREGSEE
FKQLVDEAFL LFSKRLNLNT AVRRRYKEQG KAGSLFCIVC GKSSSKEFMA AQNLVQHAFM
SHKIGLRAQH LGLHKAICVL MGWNSSVPCD AITCAPEILP DEEAFAQKED LMLWPPLVVI
HNISMSNNNP EQQKVIPIEG VEAFLRGKGI VGGKIKVCLG KPADQSVMLV KFLGTFTGLG
NAEKLHKYFA EKKHGREEFE HNTSNNINNS NSLEEETQGG QLEEHLLYGY LGIAEDLDRL
DFNTKKRILI KSKKEIQELA NAPVKTDDKS LNK
//
