ID A0A3N7G0H5_POPTR Unreviewed; 1571 AA.
AC A0A3N7G0H5;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 24-JAN-2024, entry version 19.
DE RecName: Full=USP domain-containing protein {ECO:0000259|PROSITE:PS50235};
GN ORFNames=POPTR_015G066500 {ECO:0000313|EMBL:RQP00694.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:RQP00694.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:RQP00694.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
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DR EMBL; CM009304; RQP00694.1; -; Genomic_DNA.
DR EnsemblPlants; Potri.015G066500.2.v4.1; Potri.015G066500.2.v4.1; Potri.015G066500.v4.1.
DR Gramene; Potri.015G066500.2.v4.1; Potri.015G066500.2.v4.1; Potri.015G066500.v4.1.
DR Proteomes; UP000006729; Chromosome 15.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR CDD; cd02257; Peptidase_C19; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR006866; DUF627_N.
DR InterPro; IPR006865; DUF629.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR22975:SF9; ECHINUS SPLICE FORM 3; 1.
DR PANTHER; PTHR22975; UBIQUITIN SPECIFIC PROTEINASE; 1.
DR Pfam; PF04781; DUF627; 1.
DR Pfam; PF04780; DUF629; 1.
DR Pfam; PF00443; UCH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS50235; USP_3; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT DOMAIN 1237..1570
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 268..307
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 460..481
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 935..1009
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1044..1064
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1089..1159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 289..307
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 460..474
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 945..968
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 969..1002
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1044..1060
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1097..1111
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1134..1159
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1571 AA; 176652 MW; 8DD3FC6FD7FEA472 CRC64;
MGNRKRPPNS LTKHPPSPSP AAASEEPDHP NSVTPDSDGS TIKQECGRAL NALRRGNHTK
ALRIMKDSCA KHGGDALIHR VHGTVCVKVS SIIDDPNSKQ RHIKNAIEAA RRAAELSPNS
IEFAHFYANL LYEAASDGKE YEEVMKECDR ALKIENPIDP AKESLQEESQ QKIATAEGRI
AHVQGELKNL QHKSNIASIS TWMKNLGTGE EIRLIPIRRA TEDPMEVRLV QTRRPNEIKK
ATKTQEERRK EIEVRVAAAR LLQQQKSEMG LGQSEGERSD QGVAVTPGSD RRGERRKCGS
NARKNGTNTE RKDWVRSYWN SMTLEMKREL LKIKVSDLKG YFWSSKDGLA SDVLNELLAY
GLENKSWRFW VCCRCNEKFV DADSHLHHVV QEHMGSLMPK MQEVLPQSAD NEWIEMILNS
SWKPLDISSA VKMPWNQGKC HNGELGEDFC SEHHNEDSDD FFKDARDSSP EKENLRDGYN
SCPVSSSNSD KVYNIEGKEF DGNQSSIAYT IDSWSISEDS ERAKLLEKIH DVFQALIGHK
YLAASHLNKV IQLTMDELQN LASGSRLLNR GVGQTPNCIC FLGASQLKKI LKFLQEISHY
CGLGRSPEKS IVVDGSNSGA KGPEIKEEIV LNGDEPCLCL DERLLSLEYA PSTCPDNDAT
TATSTIAAYG NGVQPDADAL LSWIFAGLSS GEQLQSWIRT KEEKMHQGME ILQTLEKEFY
HLQSLCERKC EHLGYEQALQ AVEDLCLEEG KKRETDMLVE HRSYDSVLRQ RREQLVENEH
DALFISSRFE LDAILNVLKE ADTLNANQFG YEDTYGGITS QFCDLESGED GNWRTKDHMH
QVETCIEIAI QRQKEHLSIE LSKIDAQIMR NVSGMQQLEL KLESVSALDY RSILLPLVKS
YMRAHLEDLA EKDATEKSDA AREAFLAELA LDSKKGTQGR SDNSRNTLEK GKDKRKNKEY
KKTKDSKVVA ASEQQLLQDA TNGRGSFPDA SDGNYPDSQS HLSVSDDDLK QQEEEFRWKI
EIEEEERMLE ESLEYQRRIE NEAKQKHLAE QQHKKSNRTF PEKLSGGLHD YCFDPAAADS
REPLLTQKRG LPNNLEGIPM TTASELSTGG SVEGGPSDRR PGRRSRRQKS SSRSSDGKNQ
PMLSETENTE IGSITSNLGD SATKTLRQLK VEEEDEERFQ ADLEKAMRQS LDTFQANQKI
PMMSSLKQTI SSELGNSGTS PYEVATVNVD GTDVFGTGLK NDIGDYNCFL NVIIQSLWHL
RRFRDEFLSR SRSEHVHVGD PCAVCALYDI LTAMSIVSMD TRREAVAPTS LRIALSNLYP
NSNFFQEGQM NDASEVLAVI FDCLHRAFTS GLHGSDSEAV EHSGMESWEC TKKNACIVHS
LFGMDISEQM NCQSCGVESR HLKYSAFFHN INASALRTMK VMRAESSFDE LLNLVEMNHQ
LACDTEAGGC GKPNYTHHIL STPPHVFTTV LGWQKTCESI DDITATLTAL NTEIDISVFY
RGLDPKNIRS LVSVVCYYGQ HYHCFAYSQD LDQWIMYDDK TIKVIGSWTD VLAMCEKGHL
QPQVLFFEAG N
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