ID A0A3N7G5Z1_POPTR Unreviewed; 963 AA.
AC A0A3N7G5Z1;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 27-MAR-2024, entry version 15.
DE RecName: Full=LisH domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=POPTR_018G033300 {ECO:0000313|EMBL:RQP02610.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:RQP02610.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:RQP02610.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM009307; RQP02610.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3N7G5Z1; -.
DR STRING; 3694.A0A3N7G5Z1; -.
DR InParanoid; A0A3N7G5Z1; -.
DR OrthoDB; 1410379at2759; -.
DR Proteomes; UP000006729; Chromosome 18.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR45093; TRANSCRIPTION ACTIVATOR MSS11; 1.
DR PANTHER; PTHR45093:SF2; TRANSCRIPTION ACTIVATOR MSS11; 1.
DR Pfam; PF08513; LisH; 1.
DR Pfam; PF00400; WD40; 5.
DR SMART; SM00667; LisH; 1.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF81995; beta-sandwich domain of Sec23/24; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT REPEAT 679..720
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 721..762
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 764..806
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 846..886
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 931..963
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 94..115
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 467..622
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 468..516
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 527..587
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 963 AA; 106987 MW; 5D0BFC8E3AF29C2C CRC64;
MSQTNWEADK MLDVYIHDYL VKRDLKASAQ AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW
DIFIARTNEK HSEVAASYIE TQLIKAREQQ QQQQQQQQQG QQPQPQPQHQ QQQQQQQQQQ
QQQQQQQQQQ MQMQHLILQR HAQQQQQQQQ HQQQHQQQQQ QQQHQQQQQQ QQQQQQQQHQ
QQQQHQQQQQ QQQQHQQHQQ QQRRDGAHLL NGTTNGLVGN DPLMRQNAAT ANAMATKMYE
EKLKLPMERD SLADAAMKQR FGENVGHLLD RNHASILKSA AAATGQTSEQ VLHGASGAMS
PQVQARNQQL PGSTPDIKSE INPVLNPRAA GPEGSLIGIH GSNQGGNNLT LKGWPLTGLE
QLRSGLLQQQ KPFIQAPQPF HQLQMLTPQH QQQLMLAQQS LTSPAASDES RRLRMFINNP
TMSLGKDGLT NSVGDVVPNV GSPLQTVGPL FSRGETDMRM KIKMALLQQH QHQHQQPQQQ
QQQSSNPQQQ QQQQQQLQQH VLSNQQSQSS SHNLHPQDKM GGAASVNVDG SMSNSFRGND
QVSKNQSGRK RKQPVSSSGP ANSSGTANTA GPSPSSAPST PSTHTPGDVI SMPALPHGGG
SSKPFMFGAD GTGTLTSPSN QLWDDKDLEL QADMDRFVED GSLEDNVDSF LSPDDNDPRD
VVPRMDVSKG FTFTEVNSVR ASASKVVCCH FSSDGKLLAS GGHDKRAVLW YTDNLKLKAT
LEEHTSLITD VRFSPSMPRL ATSSSDKTVR VWDADNPNFS LRTFTGHSSN VMSLDFHPTK
DDLICSCDGV GEIRYWSITN GSCTRVFKGD MARMRFQPRA GKYLAAAAEN VVSILDVETQ
ACRHSLQGHT KAIHSVCWDP SGEYLASVSE DSVRVWTLGS GSEGECVHEL SCNGNEFHSC
VFHPTFPSLL VIGCYQSLEL WNMSENKTMT LAAHDGQIAA LAVSTVTGML ASASHDKFVK
LWK
//
