ID A0A3Q7F2U3_SOLLC Unreviewed; 1137 AA.
AC A0A3Q7F2U3;
DT 10-APR-2019, integrated into UniProtKB/TrEMBL.
DT 10-APR-2019, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN Name=101253446 {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1};
OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC Solanum subgen. Lycopersicon.
OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1};
RN [1] {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1};
RX PubMed=22660326; DOI=10.1038/nature11119;
RG Tomato Genome Consortium;
RT "The tomato genome sequence provides insights into fleshy fruit
RT evolution.";
RL Nature 485:635-641(2012).
RN [2] {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1}
RP IDENTIFICATION.
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc02g071260.3.1};
RG EnsemblPlants;
RL Submitted (JAN-2019) to UniProtKB.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region. Photoconversion of Pr to Pfr
CC induces an array of morphogenic responses, whereas reconversion of Pfr
CC to Pr cancels the induction of those responses. Pfr controls the
CC expression of a number of nuclear genes including those encoding the
CC small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B
CC binding protein, protochlorophyllide reductase, rRNA, etc. It also
CC controls the expression of its own gene(s) in a negative feedback
CC fashion. {ECO:0000256|ARBA:ARBA00002479}.
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
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DR RefSeq; NP_001316689.1; NM_001329760.1.
DR AlphaFoldDB; A0A3Q7F2U3; -.
DR STRING; 4081.A0A3Q7F2U3; -.
DR PaxDb; 4081-Solyc02g071260-2-1; -.
DR EnsemblPlants; Solyc02g071260.3.1; Solyc02g071260.3.1; Solyc02g071260.3.
DR GeneID; 101253446; -.
DR Gramene; Solyc02g071260.3.1; Solyc02g071260.3.1; Solyc02g071260.3.
DR KEGG; sly:101253446; -.
DR InParanoid; A0A3Q7F2U3; -.
DR OMA; IMRESIQ; -.
DR OrthoDB; 1770905at2759; -.
DR Proteomes; UP000004994; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Reference proteome {ECO:0000313|Proteomes:UP000004994};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT DOMAIN 235..395
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 620..691
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 694..750
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 754..806
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 900..1121
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 340
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1137 AA; 126191 MW; 2EF71568D6669585 CRC64;
MESQSSENRR GGGGRTSLNQ NKQNNNKDSG LNTSSAASNM KNNASKAALA QYNADAKLMA
EFEQSSVSGK SFDYSKSVLF PPHEANEEEI TSYLSRIQRG GLVQPFGCMV AIEEPTFKII
GYSENCYDML GFKPTKMKLG LIGVDARNLF TPSSGDSLAK VMASREISLL NPIWVHSRTT
HKPFYAILHR IDVGIVIDLE PANSSDPALL LAGAVQSQKL AVRSISRLQS LPGGDIGVLC
DTAVEDVQKL TGYDRVMVYK FHDDNHGEIV SEIRRSDLEP YLGLHYPATD IPQAARFLFK
QNRVRMICDC NAQPVKVVQS EELKQPICLV NSTLRSPHEC HSKYMANMGS ISSLVMAVLI
NSGDSMKLWG LIVCHHTSPR YVPFPLRYAC EFFTQAFGLQ LNMELQLASQ LAEKKTLQMQ
TLLCDMLLRD VPFGVVTQSP SIMDLVKCDG AALYCGGKCW LLGVTPTEAQ VKDIAQWLLV
AHKDSTGLST DCLADAGYPG AALLGDAVCG MATARITSKD FLFWFRSHTA KEVKWGGAKH
HPDDKDDGGK MHPRSSFNAF LEVVKSRSLP WEIPEINAIH SLQIIMRESI QENENSSLKT
LTTSQQNDAD GPSMDELSSV AMEMVRLIET ATAPIFGVDP SGLINGWNEK IADLTGLHAS
EAVGMSLIND ITHEDSRGTV EKVLHRALLG EEEKNVEIKL RRFGKDPPGS VIYLVINACT
SRDHKNGVVG VSFVAQDVTP EKFIMDKFIQ LRGDYEAIVQ SLSPLIPPIF ASDENACCSE
WNAAMERLTG WTKYEVMGRT LPGEVFGGLC RLTGQDALTK FMILFYQAIS GHDTKKLPFG
FFNRRGEFLE VFLTANKRTD EHGNVCGCFC FLQPMTIDPE ASDERQDSKD SLWKYKEYAY
VLQQMKNPLN GIQFTHKLLE ATGVSDNQKQ LLETSEACEK QILSVIDNMD FGGIEDGKVQ
LNMEEFVLGN VVDAIVSQVM IFLKEKNLQL LHDIPDQIKT LPLYGDQIKL QRVLSDFLLS
VVHHAPSPDG WVEIKVLPGL KLIQDGNELI HLQLRMTHPG QGLPAALIDD MSGERNRWTT
QEGIALNVAQ KLLNVMNGHV RYVRGEDKCY FLIDVELQTS KPTQHGPKLE VTQEIEI
//
