ID A0A3Q7G3Z4_SOLLC Unreviewed; 1213 AA.
AC A0A3Q7G3Z4;
DT 10-APR-2019, integrated into UniProtKB/TrEMBL.
DT 10-APR-2019, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE RecName: Full=MIF4G domain-containing protein {ECO:0000259|SMART:SM00543};
OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC Solanum subgen. Lycopersicon.
OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc04g049770.3.1};
RN [1] {ECO:0000313|EnsemblPlants:Solyc04g049770.3.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g049770.3.1};
RX PubMed=22660326; DOI=10.1038/nature11119;
RG Tomato Genome Consortium;
RT "The tomato genome sequence provides insights into fleshy fruit
RT evolution.";
RL Nature 485:635-641(2012).
RN [2] {ECO:0000313|EnsemblPlants:Solyc04g049770.3.1}
RP IDENTIFICATION.
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc04g049770.3.1};
RG EnsemblPlants;
RL Submitted (JAN-2019) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR AlphaFoldDB; A0A3Q7G3Z4; -.
DR STRING; 4081.A0A3Q7G3Z4; -.
DR PaxDb; 4081-Solyc04g049760-2-1; -.
DR EnsemblPlants; Solyc04g049770.3.1; Solyc04g049770.3.1; Solyc04g049770.3.
DR Gramene; Solyc04g049770.3.1; Solyc04g049770.3.1; Solyc04g049770.3.
DR InParanoid; A0A3Q7G3Z4; -.
DR OMA; DFQHHQI; -.
DR Proteomes; UP000004994; Chromosome 4.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0035145; C:exon-exon junction complex; IBA:GO_Central.
DR GO; GO:0005844; C:polysome; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IBA:GO_Central.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR InterPro; IPR039762; Nmd2/UPF2.
DR InterPro; IPR007193; Upf2/Nmd2_C.
DR PANTHER; PTHR12839; NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2; 1.
DR PANTHER; PTHR12839:SF7; REGULATOR OF NONSENSE TRANSCRIPTS 2; 1.
DR Pfam; PF02854; MIF4G; 2.
DR Pfam; PF04050; Upf2; 1.
DR SMART; SM00543; MIF4G; 3.
DR SUPFAM; SSF48371; ARM repeat; 3.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000004994}.
FT DOMAIN 62..284
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 484..672
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 687..903
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT REGION 1..28
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 317..350
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 389..408
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 415..477
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 928..1026
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1068..1119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1158..1213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 270..304
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 333..347
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 418..477
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 928..943
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 944..963
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 966..988
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 989..1016
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1078..1097
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1163..1181
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1213 AA; 138268 MW; 01FBBF74DB1418F5 CRC64;
MEHPEDDCRV GVEHPEKHED EEAVARHEEF KKSVEAKIAL RQNNLNPERP DTGFLRTLDS
SIKRNTAVIK KLKQINEEQR EGLMEELRSV NLSKFVSEAV TAICDAKLRA ADIQAAVLIC
SLLHQRYKDF SPSLVQGLVK IFFPGKAAED VDVDRNARAM KKRSTLKLLL ELYFVGVVDD
TGIFVNIVKD LTSVEHLKDR DATQTNLSLL ASFARQGRYL LGLQLAGQDI LEELFKALNV
TTDQKRFFRK VFQTYYDASV ELLQSEHASL RQMEHENEKI LSAKGELNEE NASAYEKLRK
AYDQLYRGIS GLAEALDLQP PVMPEDGHTT RVTSGEDASS PGGSKDSSSL EALWDDEDTR
AFYECLPDLR AFVPAVLLGE AEPKLSEQLA KVQDHSIDST PDADETQTAA QEIADAVAVQ
EDRNDIGKDK DEKDKEKTKE KSKEKDKDEK DKEPDKEKTR EKEAERKGEG DKEKAKGVEG
TNLDSLLQRL PGCVSRDLID QLTVEFCYLN SKSSRKKLVR ALFNVPRTSL ELLPYYSRMV
ATLSTCMKDV SSMLLQLLEE EFNFLINKKD QMNIETKIRN IRFIGELCKF RIAPPGLVFS
CLKACLDDFS HHNIDVACNL LETCGRFLYR SPETTIRMAN MLEILMRLKN VKNLDPRHIT
LVENAYYLCK PPERSARVSK VRPPLHQYIR KLLFSDLDKS SLEHVLRQLR KLPWSECEAY
LLKCFMKVHR GKYGQIHLIA SLTACLSRYH DDFSVAVVDE VYKYLSLTTI FLRRIVLEEI
RVGLELNDYG MQQRRIAHMR FLGELYNYEL VDSSVIFDTL YLILVFGHGT SEQDVLDPPE
DCFRIRMVIT LLETCGHYFD RGSSKRKLDR FLIHFQRYIL NKGVLPLDIE FDLQDLFAEL
RPNMTRYASI EEVNAALVDL EEHERIVTSE KANNEKHSET EKIPSRTTSG MSVNGQSLSN
GIEENGLHEE VVETESDSEN GTIEHVAHDD DEETDDWNRD DRCDTEDESD EGDGPGSDEE
DKVHVRSKVA EVDPLEEAEF ERELRALMQE SLDSRKLELR GRPTLNMTIP MNVFEGPTKD
HRGVEGESGD ETLDEATGGS KEVPVKVLVK RGNKQQTKKM LIPRDCSLIQ STKQKEAAEL
EEKQDIKRLV LEYNDREEEE LNGLGNQPSS WTQSSGSRVA HRGSTWDAPG RGSGSRHRYL
HHSGGGLYYG RRR
//