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Database: UniProt
Entry: A0A3Q7HRK9_SOLLC
LinkDB: A0A3Q7HRK9_SOLLC
Original site: A0A3Q7HRK9_SOLLC 
ID   A0A3Q7HRK9_SOLLC        Unreviewed;      1274 AA.
AC   A0A3Q7HRK9;
DT   10-APR-2019, integrated into UniProtKB/TrEMBL.
DT   10-APR-2019, sequence version 1.
DT   24-JAN-2024, entry version 24.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
GN   Name=101257199 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
OS   Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC   Solanum subgen. Lycopersicon.
OX   NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RN   [1] {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RX   PubMed=22660326; DOI=10.1038/nature11119;
RG   Tomato Genome Consortium;
RT   "The tomato genome sequence provides insights into fleshy fruit
RT   evolution.";
RL   Nature 485:635-641(2012).
RN   [2] {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1}
RP   IDENTIFICATION.
RC   STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RG   EnsemblPlants;
RL   Submitted (JAN-2019) to UniProtKB.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC         Evidence={ECO:0000256|ARBA:ARBA00000600};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:13066;
CC         Evidence={ECO:0000256|ARBA:ARBA00000600};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC   -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC       {ECO:0000256|ARBA:ARBA00007913}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01341}.
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DR   RefSeq; XP_004245855.1; XM_004245807.3.
DR   AlphaFoldDB; A0A3Q7HRK9; -.
DR   STRING; 4081.A0A3Q7HRK9; -.
DR   PaxDb; 4081-Solyc08g077420-2-1; -.
DR   EnsemblPlants; Solyc08g077420.3.1; Solyc08g077420.3.1; Solyc08g077420.3.
DR   GeneID; 101257199; -.
DR   Gramene; Solyc08g077420.3.1; Solyc08g077420.3.1; Solyc08g077420.3.
DR   KEGG; sly:101257199; -.
DR   InParanoid; A0A3Q7HRK9; -.
DR   OMA; DTALECY; -.
DR   OrthoDB; 170190at2759; -.
DR   Proteomes; UP000004994; Chromosome 8.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016787; F:hydrolase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IBA:GO_Central.
DR   CDD; cd21407; 1B_UPF1-like; 1.
DR   CDD; cd18039; DEXXQc_UPF1; 1.
DR   CDD; cd18808; SF1_C_Upf1; 1.
DR   CDD; cd21400; ZBD_UPF1-like; 1.
DR   Gene3D; 2.40.30.230; -; 1.
DR   Gene3D; 6.10.140.1240; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR045055; DNA2/NAM7-like.
DR   InterPro; IPR041679; DNA2/NAM7-like_C.
DR   InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR   InterPro; IPR006935; Helicase/UvrB_N.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR047187; SF1_C_Upf1.
DR   InterPro; IPR040812; UPF1_1B_dom.
DR   InterPro; IPR018999; UPF1_CH/ZBD.
DR   PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR   PANTHER; PTHR10887:SF499; HELICASE ATP-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF13086; AAA_11; 1.
DR   Pfam; PF13087; AAA_12; 1.
DR   Pfam; PF04851; ResIII; 1.
DR   Pfam; PF18141; UPF1_1B_dom; 1.
DR   Pfam; PF09416; UPF1_Zn_bind; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51997; UPF1_CH_RICH; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW   ProRule:PRU01341}; Reference proteome {ECO:0000313|Proteomes:UP000004994};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU01341};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU01341}.
FT   DOMAIN          131..290
FT                   /note="Upf1"
FT                   /evidence="ECO:0000259|PROSITE:PS51997"
FT   DOMAIN          496..629
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   REGION          1..96
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          201..231
FT                   /note="C4"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT   REGION          955..998
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1044..1109
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1201..1274
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..26
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        46..77
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        957..982
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1053..1109
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1274 AA;  140049 MW;  E00021293A17C4DA CRC64;
     MDSQGNSLYD TASQPDTGND VYTFLEFNTQ GEEFDYPEFH ELSQPIRSSA WPTPSDSLVS
     EVPDRPQSSS DASQASGKSR GGDGGRSRSS SSSKISSNKA AAVAVDALAA GMSGLNFEET
     GDDENFEYGK GDFAVEHACK YCGVTNPACV VRCNVPSCRK WFCNSRGNTS GSHIVNHLVR
     AKHKEVCLHK DSPLGETILE CYNCGCRNVF LLGFISAKTE SVVVLLCREP CLNVNALKDM
     NWDLSQWCPL IDDRCFLQWL VKVPSEQEQL RARQISAQQI NKIEELWKTN PDANLEDLEK
     PGVDDEPQPV GLKYEDAYQY QNIFAPLIKL EADYDKMMKE SQSKDNLTVR WDIGLNKKRV
     AYFVFPKEDN ELRLVPGDEL RLRYSGDAAH PAWQSVGHVI KLTAQEEVAL ELRASQGVPV
     DVTHGLSVDF VWKSTSFDRM QTAMKTFAVD ETSVSGYIYH HLLGHEVEMQ MIRNALPRRF
     GAPGLPELNA SQVFAVKSVL QKPVSLIQGP PGTGKTVTSA AIVYHMAKQG QGQVLVCAPS
     NVAVDQLAEK ISATGLKVVR LCAKSREAVS SPVEHLTLHY QVRHLDTSEK SELHKLQQLK
     DEQGELSSGD EKKYKALKRA TEREIAQSAD VICCTCVGAG DPRLANFRFR QVLIDESTQA
     AEPECLIPLV LGAKQIVLVG DHCQLGPVIM CKKAARAGLA QSLFERLVLL GVKPIRLQVQ
     YRMHPALSEF PSNSFYEGTL QNGVTINERQ SLGIDFPWPV PNRPMFFYVQ MGQEEISASG
     TSYLNRTEAA NVEKLVTTFL KSGVVPSQIG VITPYEGQRA YIVNYMSRNG ALRQQLYKEI
     EVASVDSFQG REKDYIILSC VRSNEHQGIG FLNDPRRLNV ALTRARYGIV ILGNPKVLSK
     QPLWNGLLTH YKEHECLVEG PLNNLKQSMV QFQKPKKIYN DRRLFFGGGP GIVPSDNYGS
     PASSNPNADR RSSRSRGSYM APRPSNGTHR PGVYPSGYPM PRVPISPYHG GLPQPYAIPA
     RGAIQGPVGA VPHVPQLGSR GFGAGRGNAN APIGSHLSHQ QASQQPIGSH GPNFNFSALE
     NPNSQPSGGP LSQPGYASNM AVQGPSQTFR DGFSMGGMSQ DFLGDDFKSQ GSHVSYHVAD
     FSTQASQSGY AVDYVNQGAQ AGFPGNYLNR NSQAGYSRFG SGNEFMSQDY MTYGSQGLFT
     QAGYSDPSQE DSSQNHFGMS NANPLHSQSL LNPLYSQPFG HYNTQPLNMQ SSQPQQPQAP
     QVQGSQNQKL HYNG
//
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