ID A0A3Q7HRK9_SOLLC Unreviewed; 1274 AA.
AC A0A3Q7HRK9;
DT 10-APR-2019, integrated into UniProtKB/TrEMBL.
DT 10-APR-2019, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
GN Name=101257199 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC Solanum subgen. Lycopersicon.
OX NCBI_TaxID=4081 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RN [1] {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RX PubMed=22660326; DOI=10.1038/nature11119;
RG Tomato Genome Consortium;
RT "The tomato genome sequence provides insights into fleshy fruit
RT evolution.";
RL Nature 485:635-641(2012).
RN [2] {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1}
RP IDENTIFICATION.
RC STRAIN=cv. Heinz 1706 {ECO:0000313|EnsemblPlants:Solyc08g077420.3.1};
RG EnsemblPlants;
RL Submitted (JAN-2019) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:13066;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC {ECO:0000256|ARBA:ARBA00007913}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01341}.
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DR RefSeq; XP_004245855.1; XM_004245807.3.
DR AlphaFoldDB; A0A3Q7HRK9; -.
DR STRING; 4081.A0A3Q7HRK9; -.
DR PaxDb; 4081-Solyc08g077420-2-1; -.
DR EnsemblPlants; Solyc08g077420.3.1; Solyc08g077420.3.1; Solyc08g077420.3.
DR GeneID; 101257199; -.
DR Gramene; Solyc08g077420.3.1; Solyc08g077420.3.1; Solyc08g077420.3.
DR KEGG; sly:101257199; -.
DR InParanoid; A0A3Q7HRK9; -.
DR OMA; DTALECY; -.
DR OrthoDB; 170190at2759; -.
DR Proteomes; UP000004994; Chromosome 8.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IBA:GO_Central.
DR CDD; cd21407; 1B_UPF1-like; 1.
DR CDD; cd18039; DEXXQc_UPF1; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR CDD; cd21400; ZBD_UPF1-like; 1.
DR Gene3D; 2.40.30.230; -; 1.
DR Gene3D; 6.10.140.1240; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR InterPro; IPR040812; UPF1_1B_dom.
DR InterPro; IPR018999; UPF1_CH/ZBD.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF499; HELICASE ATP-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF18141; UPF1_1B_dom; 1.
DR Pfam; PF09416; UPF1_Zn_bind; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51997; UPF1_CH_RICH; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU01341}; Reference proteome {ECO:0000313|Proteomes:UP000004994};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU01341};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU01341}.
FT DOMAIN 131..290
FT /note="Upf1"
FT /evidence="ECO:0000259|PROSITE:PS51997"
FT DOMAIN 496..629
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT REGION 1..96
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 201..231
FT /note="C4"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT REGION 955..998
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1044..1109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1201..1274
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..26
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 46..77
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 957..982
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1053..1109
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1274 AA; 140049 MW; E00021293A17C4DA CRC64;
MDSQGNSLYD TASQPDTGND VYTFLEFNTQ GEEFDYPEFH ELSQPIRSSA WPTPSDSLVS
EVPDRPQSSS DASQASGKSR GGDGGRSRSS SSSKISSNKA AAVAVDALAA GMSGLNFEET
GDDENFEYGK GDFAVEHACK YCGVTNPACV VRCNVPSCRK WFCNSRGNTS GSHIVNHLVR
AKHKEVCLHK DSPLGETILE CYNCGCRNVF LLGFISAKTE SVVVLLCREP CLNVNALKDM
NWDLSQWCPL IDDRCFLQWL VKVPSEQEQL RARQISAQQI NKIEELWKTN PDANLEDLEK
PGVDDEPQPV GLKYEDAYQY QNIFAPLIKL EADYDKMMKE SQSKDNLTVR WDIGLNKKRV
AYFVFPKEDN ELRLVPGDEL RLRYSGDAAH PAWQSVGHVI KLTAQEEVAL ELRASQGVPV
DVTHGLSVDF VWKSTSFDRM QTAMKTFAVD ETSVSGYIYH HLLGHEVEMQ MIRNALPRRF
GAPGLPELNA SQVFAVKSVL QKPVSLIQGP PGTGKTVTSA AIVYHMAKQG QGQVLVCAPS
NVAVDQLAEK ISATGLKVVR LCAKSREAVS SPVEHLTLHY QVRHLDTSEK SELHKLQQLK
DEQGELSSGD EKKYKALKRA TEREIAQSAD VICCTCVGAG DPRLANFRFR QVLIDESTQA
AEPECLIPLV LGAKQIVLVG DHCQLGPVIM CKKAARAGLA QSLFERLVLL GVKPIRLQVQ
YRMHPALSEF PSNSFYEGTL QNGVTINERQ SLGIDFPWPV PNRPMFFYVQ MGQEEISASG
TSYLNRTEAA NVEKLVTTFL KSGVVPSQIG VITPYEGQRA YIVNYMSRNG ALRQQLYKEI
EVASVDSFQG REKDYIILSC VRSNEHQGIG FLNDPRRLNV ALTRARYGIV ILGNPKVLSK
QPLWNGLLTH YKEHECLVEG PLNNLKQSMV QFQKPKKIYN DRRLFFGGGP GIVPSDNYGS
PASSNPNADR RSSRSRGSYM APRPSNGTHR PGVYPSGYPM PRVPISPYHG GLPQPYAIPA
RGAIQGPVGA VPHVPQLGSR GFGAGRGNAN APIGSHLSHQ QASQQPIGSH GPNFNFSALE
NPNSQPSGGP LSQPGYASNM AVQGPSQTFR DGFSMGGMSQ DFLGDDFKSQ GSHVSYHVAD
FSTQASQSGY AVDYVNQGAQ AGFPGNYLNR NSQAGYSRFG SGNEFMSQDY MTYGSQGLFT
QAGYSDPSQE DSSQNHFGMS NANPLHSQSL LNPLYSQPFG HYNTQPLNMQ SSQPQQPQAP
QVQGSQNQKL HYNG
//