ID A0A3Q9GAV1_9GAMM Unreviewed; 759 AA.
AC A0A3Q9GAV1;
DT 10-APR-2019, integrated into UniProtKB/TrEMBL.
DT 10-APR-2019, sequence version 1.
DT 24-JAN-2024, entry version 14.
DE RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411};
DE Flags: Precursor;
GN Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411,
GN ECO:0000313|EMBL:AZQ83259.1};
GN ORFNames=EKO29_03805 {ECO:0000313|EMBL:AZQ83259.1};
OS Colwellia sp. Arc7-635.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Colwelliaceae; Colwellia.
OX NCBI_TaxID=2497879 {ECO:0000313|EMBL:AZQ83259.1, ECO:0000313|Proteomes:UP000286937};
RN [1] {ECO:0000313|EMBL:AZQ83259.1, ECO:0000313|Proteomes:UP000286937}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Arc7-635 {ECO:0000313|EMBL:AZQ83259.1,
RC ECO:0000313|Proteomes:UP000286937};
RA Lin J.;
RT "Complete Genome Sequences of Colwellia sp. Arc7-635, a Denitrifying
RT Bacterium Isolated from Arctic Seawater.";
RL Submitted (DEC-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Together with LptE, is involved in the assembly of
CC lipopolysaccharide (LPS) at the surface of the outer membrane.
CC {ECO:0000256|HAMAP-Rule:MF_01411}.
CC -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC complex. Interacts with LptE and LptA. {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|HAMAP-Rule:MF_01411}.
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DR EMBL; CP034660; AZQ83259.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3Q9GAV1; -.
DR KEGG; cov:EKO29_03805; -.
DR OrthoDB; 9760225at2; -.
DR Proteomes; UP000286937; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR InterPro; IPR020889; LipoPS_assembly_LptD.
DR InterPro; IPR007543; LptD_C.
DR InterPro; IPR005653; OstA-like_N.
DR PANTHER; PTHR30189; LPS-ASSEMBLY PROTEIN; 1.
DR PANTHER; PTHR30189:SF1; LPS-ASSEMBLY PROTEIN LPTD; 1.
DR Pfam; PF04453; LptD; 1.
DR Pfam; PF03968; LptD_N; 1.
PE 3: Inferred from homology;
KW Cell outer membrane {ECO:0000256|ARBA:ARBA00023237, ECO:0000256|HAMAP-
KW Rule:MF_01411};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_01411};
KW Signal {ECO:0000256|HAMAP-Rule:MF_01411}.
FT SIGNAL 1..22
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT CHAIN 23..759
FT /note="LPS-assembly protein LptD"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT /id="PRO_5018797644"
FT DOMAIN 85..188
FT /note="Organic solvent tolerance-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF03968"
FT DOMAIN 298..662
FT /note="LptD C-terminal"
FT /evidence="ECO:0000259|Pfam:PF04453"
SQ SEQUENCE 759 AA; 86227 MW; 7D33087D1F9E13F7 CRC64;
MRFPLNKISL VFLLPCTFTS NAQNTETNKN ITVQCPIPSY ANIAKETGKE VNENFTILSS
TSSIKKGEYA NFTGGVTLLN QDKSVVADEL SVNRTTSTVN ASGDIHFQNN GIDIFADSLN
INQLQKTTSL TTTSYQLNGS AGHGSAKKIN IDGNGETLSF TDSSFTTCYG AVPDWQMHAS
EINISSDEKS LEAYNARFTL FDIPVLYVPY LTMPIGNDRQ SGFLYPTISS SNNSGIEVKT
PYYINIASDM DATITPRYMS ERGTQLIAEY RYMQDFQSGK VDIEYLNKDK KLTNNDDSRY
LARFQHVGTF AERFRAHIDY TTISDDNYLV DLGSSQFNDN DSYLYQVGEI AYFAENWQTT
LKLQDFEVLG NHQRSYKTLP QIEISRQQKL DDFDGIIDIY SELSSFDSAD KTKPTAQRYH
VEAGLLYPIA TPAWFLNSEL KVLQTNYRQT NIGNDTLLEK NVSRTLPKLR LHGGVNFDRD
LTLFNSGYSQ TLEPQLQYLY IPEKDQDNIG IYDTTNLQDD YNGLFRDRRF SGIDRIAQAN
QISWGVTSRL LTEENNEVLR FSLGRIVYFN ESNFNSSGQD TLVDKSALAA DIFVHLSRNW
QFSSDIQYNT DSRKTNKSQT TIDYLFSNNQ TIQLNHRYAR DVSGETLEQV SMATNVKIAQ
QWQLVGRFTQ DLQGKRSIES YAGLEYSSCC WGIRFTYHRN INSKIDEIGN IDDNRDAFDS
SFNIQFVYNG INSNKPSNSV GDMFNSSIFG YKRPYFLNN
//
