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Database: UniProt
Entry: A0A3S2XQZ7_9RHOB
LinkDB: A0A3S2XQZ7_9RHOB
Original site: A0A3S2XQZ7_9RHOB 
ID   A0A3S2XQZ7_9RHOB        Unreviewed;       205 AA.
AC   A0A3S2XQZ7;
DT   10-APR-2019, integrated into UniProtKB/TrEMBL.
DT   10-APR-2019, sequence version 1.
DT   08-NOV-2023, entry version 15.
DE   RecName: Full=Large ribosomal subunit protein uL4 {ECO:0000256|ARBA:ARBA00035244, ECO:0000256|HAMAP-Rule:MF_01328};
GN   Name=rplD {ECO:0000256|HAMAP-Rule:MF_01328};
GN   ORFNames=DXV76_14895 {ECO:0000313|EMBL:RVT82530.1};
OS   Rhodobacteraceae bacterium CCMM004.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC   Paracoccaceae.
OX   NCBI_TaxID=2499834 {ECO:0000313|EMBL:RVT82530.1, ECO:0000313|Proteomes:UP000287438};
RN   [1] {ECO:0000313|EMBL:RVT82530.1, ECO:0000313|Proteomes:UP000287438}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCMM004 {ECO:0000313|EMBL:RVT82530.1,
RC   ECO:0000313|Proteomes:UP000287438};
RA   Zhang Z.;
RT   "Salalgibacter marinus gen. nov., sp. nov., isolated from a Synechococcus
RT   culture.";
RL   Submitted (JAN-2019) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Forms part of the polypeptide exit tunnel.
CC       {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC       initially binds near the 5'-end of the 23S rRNA. It is important during
CC       the early stages of 50S assembly. It makes multiple contacts with
CC       different domains of the 23S rRNA in the assembled 50S subunit and
CC       ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC       Rule:MF_01328}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC       {ECO:0000256|ARBA:ARBA00010528, ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:RVT82530.1}.
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DR   EMBL; RZWH01000005; RVT82530.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A3S2XQZ7; -.
DR   OrthoDB; 9803201at2; -.
DR   Proteomes; UP000287438; Unassembled WGS sequence.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.1370.10; -; 1.
DR   HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR   InterPro; IPR002136; Ribosomal_uL4.
DR   InterPro; IPR013005; Ribosomal_uL4-like.
DR   InterPro; IPR023574; Ribosomal_uL4_dom_sf.
DR   NCBIfam; TIGR03953; rplD_bact; 1.
DR   PANTHER; PTHR10746:SF6; 39S RIBOSOMAL PROTEIN L4, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR10746; 50S RIBOSOMAL PROTEIN L4; 1.
DR   Pfam; PF00573; Ribosomal_L4; 1.
DR   SUPFAM; SSF52166; Ribosomal protein L4; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000287438};
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW   Rule:MF_01328};
KW   Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW   Rule:MF_01328}; RNA-binding {ECO:0000256|HAMAP-Rule:MF_01328};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01328}.
SQ   SEQUENCE   205 AA;  22287 MW;  9BFC2F9D9E72988A CRC64;
     MKLDVITLDG GSAGEVELGD DVFGLEPRAD ILHRVVRWQR NNAQQGTHKV KTRSETSYST
     KKIYRQKGTG GARHGDRNAP IFRKGGIYKG PVPRSHGHEL TKKFRKLGLK HALSSKAQAG
     QIVVIETAEA EGKTAALAKQ VKELGWKRAL VIDGAEVNEG FARAAANIEG LDVLPSMGAN
     VYDILKRDTL VLTKAAVEAL EARLK
//
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