ID A0A401NMF8_SCYTO Unreviewed; 1825 AA.
AC A0A401NMF8;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=IF rod domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=scyTo_0014436 {ECO:0000313|EMBL:GCB62078.1};
OS Scyliorhinus torazame (Cloudy catshark).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae;
OC Scyliorhinus.
OX NCBI_TaxID=75743 {ECO:0000313|EMBL:GCB62078.1, ECO:0000313|Proteomes:UP000288216};
RN [1] {ECO:0000313|EMBL:GCB62078.1, ECO:0000313|Proteomes:UP000288216}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=30297745; DOI=.1038/s41559-018-0673-5;
RA Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K,
RA Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R,
RA Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita A,
RA Kuratani S, Sato K, Hyodo S Kuraku.S.;
RT "Shark genomes provide insights into elasmobranch evolution and the origin
RT of vertebrates.";
RL Nat. Ecol. Evol. 2:1761-1771(2018).
CC -!- SIMILARITY: Belongs to the LRRFIP family.
CC {ECO:0000256|ARBA:ARBA00008275}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GCB62078.1}.
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DR EMBL; BFAA01007745; GCB62078.1; -; Genomic_DNA.
DR STRING; 75743.A0A401NMF8; -.
DR OMA; ETHRMHE; -.
DR Proteomes; UP000288216; Unassembled WGS sequence.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.20.5.4090; -; 1.
DR InterPro; IPR019139; LRRFIP1/2.
DR PANTHER; PTHR19212; LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN; 1.
DR PANTHER; PTHR19212:SF5; LEUCINE-RICH REPEAT FLIGHTLESS-INTERACTING PROTEIN 1; 1.
DR Pfam; PF09738; LRRFIP; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Reference proteome {ECO:0000313|Proteomes:UP000288216}.
FT REGION 1..60
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 163..196
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 297..321
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 339..358
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 645..664
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 703..1446
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1516..1585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1653..1748
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1762..1825
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..22
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 23..56
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 173..196
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 300..315
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 714..844
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 852..918
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 930..1009
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1010..1024
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1025..1061
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1068..1087
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1097..1171
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1178..1197
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1207..1269
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1298..1371
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1378..1446
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1516..1530
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1531..1566
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1705..1738
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1807..1825
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1825 AA; 197563 MW; 3CF49488A93F0F2E CRC64;
MSILDSPEPV EERLEKEITE KGSRAASSLS AATLASLGGT SSRRGSGETT TSMDTEGSIR
EIKDSLAEVE EKYKKAMVSN AQLDNEKTNL MYQVDTLRES LLELEEQLAE THRMHEEKTK
ELDRQKQAYS VLQHQFETIK ETLKEREEML MAYGMLTNGE AEPVRKEGNA HTQAAETDPQ
AAAQLRSSSD SPLGESHELQ MRNEILETVG KRGILQNTGI DEQMKETGNR EMLMDNIQEK
DITEDCEELT ESETPAVTVR DNGDSNQIEH TAANLDDEEQ SACDTQKLGG KEVSEGINSV
LGSGEGNQSC GSREENESDF GAKGKQVHVD INQNLNHDRR RPRNIGEQGT HGGIKEETHP
EVGNDLVVVH VDSVVTGADN QAIIEETQKV VQQVLENAIE ILQQHRCGHK LSEETRDKDE
EVTQVEGGLD QMKGEKLTQK QEKPEPVHVE AKELDGMVAK EAGPEQVAIG ESELYCTAQE
TEICSESFHN DLARESQEAE QVLSFAPGQN GQFGSGGEDV NYFDCPVQDG AENGERNYQN
RSEQPVDNAS IASVELEEEV EKMAEKVETG TNSLSQAAQK EVEVDEEVAC HLKGVNGLIV
GDEVKQLIVT GEDPDWRNEG TVTGGVEGCL QDGEVKVQGL EKEVPPVEAE SGPGAEQGDG
ASQVMQQGKV EGKLKHGYLQ EMTPTGGETK VGVEAENQAT GIEGNVKNYG ADNVKGHGEV
EEEVKNPGHG EARSYGENED MDDIKAQGGE REVRGHNTGE GKGYKREIKK ESDHGEGESK
VKNTRNYEDE MKDYNCDQVK GQGEKESEAN DSDGQNEVEN HKKVQVVVEV PGEVKVKGDE
SEAQDSSASE FNGFEKEGKV KGHPEEEGEV EGFRVEKGEV KGAPEEEAEV KGTPEEESEL
KGTPEEEGEI KGPREEDDEV EGAPEQQGEV KGAPEEDGEV KGAPEEEGDV NGTPEEEGEV
KGAPEEEGEI IGAPEEDGEV KGAPEEEGDV NGTPEEEGEV KGTPEEEGEV KDPREEEDEV
ACAPEEESEV KGAPEEEGEV KGTPEEEGEV KGPREEGGEI GVVLEEEPGV KGPREEKGQV
EGSPEEEGEV KDAPEEEDVV EGCRVKKGEV KGSPEVEGKV KGSPEEEGKV KDAPEEEGEV
KSAPEEEGEV KGTPEEEGEV KGPREEGGEI GVVLEEEPGV KGPREEDGQG EGSPEEEGEV
KDAPEEEDTV EGFRVKKGEV KGSPEVEGKV KGSPEEEGKV KDAPEEEGEV KSAPEEEGKV
KSPREEEGEV GGFPDEEAGV KGPREEGGET GGVPEEEAGV KGLREEEDEV EGAPEEEGKV
KGALEEEGKV KDAPEEAGKV KSAPKEEAGV KGSRDEEGEI KGAREEEGEV GGVPEVEGGV
KGHRKEEGEV KSTPEKDVEI KGLREVGDVE GPPEDATKGK GPPEKEGDIK GTKEEEMDDI
KDPREGKVNF ELESEKLLFS NMEGIVEEMG EVNIAENSKE AVFPDLQTVK IEKEFEEKKG
VDVTECDLSG QLSVVVQESG KGNQVQSKIE ETNEDTPENN TEDVHQVRDR KGEQGTPTKE
ETEITEEATG QEGMPVKKGE KIRQVPVTSS SFEEFGEKAQ MSAGVVNDLD ESTVYELTKE
SEEVAQESLQ QGPIKSGVVL VNVIGQGMIM QDGKREVPVK EEGNISGTSN KPDKAQCCET
RKQRAGDAPV SQTDVEEQEL RGDDEDAEEG HKFEWDDETS ELFEDETLDK KEMPEGTEQK
GKVGAGIEVE PQAIVNAGSI DHVRSNTDNS GVGVLTHHGQ GGEHDGQEGE HGGQGGDEMV
QRATMADAGK DGKRKSKSKE DCSLS
//
