ID A0A401NWA9_SCYTO Unreviewed; 865 AA.
AC A0A401NWA9;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=116 kDa U5 small nuclear ribonucleoprotein component {ECO:0000256|ARBA:ARBA00018774};
DE AltName: Full=U5 snRNP-specific protein, 116 kDa {ECO:0000256|ARBA:ARBA00031432};
GN ORFNames=scyTo_0004722 {ECO:0000313|EMBL:GCB65149.1};
OS Scyliorhinus torazame (Cloudy catshark).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae;
OC Scyliorhinus.
OX NCBI_TaxID=75743 {ECO:0000313|EMBL:GCB65149.1};
RN [1] {ECO:0000313|EMBL:GCB65149.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=30297745; DOI=.1038/s41559-018-0673-5;
RA Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K,
RA Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R,
RA Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita A,
RA Kuratani S, Sato K, Hyodo S Kuraku.S.;
RT "Shark genomes provide insights into elasmobranch evolution and the origin
RT of vertebrates.";
RL Nat. Ecol. Evol. 2:1761-1771(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GCB65149.1}.
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DR EMBL; BFAA01001418; GCB65149.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A401NWA9; -.
DR STRING; 75743.A0A401NWA9; -.
DR OMA; THRMTTF; -.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR041095; EFG_II.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF14492; EFG_III; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 123..384
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..49
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..46
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 865 AA; 97894 MW; 143A08D3FA9453ED CRC64;
MDTDLYDEFG NYIGPELDSD EEDGLGRDDD VDEDDDDDDE AGDQDDDHVG MEVVLHEDKK
YYPTAEEVYG PEVETIVQEE DTQPLTEPII KPVKKKKFTL MEQELPETVY DMEFLADLMD
NSELIRNITL CGHLHHGKTN FVDCLIEQTH PEIRKKDDRD LRYTDILFTE QERGVGIKST
PVTMVLPDSK GKSYLFNIMD TPGHVNFSDE VTAGFRISDG MVLFIDAAEG VMLNTERLIK
HAVQEKLAVT VCINKIDRLI LELKLPPTDA YYKLRHIVDE VNGLLSSQYS ICFTLGSFAK
IYADTYGDIN YMEFAKRLWG DIYFNPKTRK FTKKAPTSNS QRSFVEFILE PVYKILSQVV
GDVDTTLPRT LDELGIHLTK EELKLNIRPL LRLVCKKFFG DFTGLVDMCV QHIPSPQSGA
RSKIEHTYTG GLDLDLGETM LECDPDGPLM CHTTKMYSTE DGVQFHAFGR VLSGTIHAGQ
PVKVLGENYT LEDEEDSQIC TVGRLWISVA RYHIEVNRVP AGNWVLIEGV DQPIVKTATI
TEPRGNDEAQ IFRPLKFNTA SVIKIAVEPV NPSELPKMLD GLRKVNKSYP SLTTKVEESG
EHVILGTGEL YLDCVMHDLR KMYSEIDIKV ADPVVTFCET VVETSSLKCF AETPNKKNKI
TMIAEPLEKG LAEDIENEVV QITWNRKKLG EFFQTKYDWD LLAARSIWAF GPDTTGPNIL
VDDTLPSEVD KALLGYVKDS IVQGFQWGTR EGPLCDERSP LYTIKAFVPA IDSFGFETDL
RTHTQGQAFS LSVFHHWQIV PGDPLDKSII IRPLEPQPAP HLAREFMIKT RRRKGLSEDV
SISKFFDDPM LLELAKQDVV LNYPL
//