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Database: UniProt
Entry: A0A401NWA9_SCYTO
LinkDB: A0A401NWA9_SCYTO
Original site: A0A401NWA9_SCYTO 
ID   A0A401NWA9_SCYTO        Unreviewed;       865 AA.
AC   A0A401NWA9;
DT   08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT   08-MAY-2019, sequence version 1.
DT   24-JAN-2024, entry version 20.
DE   RecName: Full=116 kDa U5 small nuclear ribonucleoprotein component {ECO:0000256|ARBA:ARBA00018774};
DE   AltName: Full=U5 snRNP-specific protein, 116 kDa {ECO:0000256|ARBA:ARBA00031432};
GN   ORFNames=scyTo_0004722 {ECO:0000313|EMBL:GCB65149.1};
OS   Scyliorhinus torazame (Cloudy catshark).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae;
OC   Scyliorhinus.
OX   NCBI_TaxID=75743 {ECO:0000313|EMBL:GCB65149.1};
RN   [1] {ECO:0000313|EMBL:GCB65149.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=30297745; DOI=.1038/s41559-018-0673-5;
RA   Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K,
RA   Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R,
RA   Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita A,
RA   Kuratani S, Sato K, Hyodo S Kuraku.S.;
RT   "Shark genomes provide insights into elasmobranch evolution and the origin
RT   of vertebrates.";
RL   Nat. Ecol. Evol. 2:1761-1771(2018).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:GCB65149.1}.
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DR   EMBL; BFAA01001418; GCB65149.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A401NWA9; -.
DR   STRING; 75743.A0A401NWA9; -.
DR   OMA; THRMTTF; -.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR   GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR   GO; GO:0003746; F:translation elongation factor activity; IEA:InterPro.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR   CDD; cd04090; EF2_II_snRNP; 1.
DR   CDD; cd01683; EF2_IV_snRNP; 1.
DR   CDD; cd16264; snRNP_III; 1.
DR   CDD; cd04167; Snu114p; 1.
DR   Gene3D; 3.30.230.10; -; 1.
DR   Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 2.40.30.10; Translation factors; 1.
DR   Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR   InterPro; IPR041095; EFG_II.
DR   InterPro; IPR035647; EFG_III/V.
DR   InterPro; IPR000640; EFG_V-like.
DR   InterPro; IPR004161; EFTu-like_2.
DR   InterPro; IPR031950; EFTUD2_N.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR   InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR   InterPro; IPR005225; Small_GTP-bd_dom.
DR   InterPro; IPR044121; Snu114_GTP-bd.
DR   InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR   NCBIfam; TIGR00231; small_GTP; 1.
DR   PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR   PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR   Pfam; PF00679; EFG_C; 1.
DR   Pfam; PF14492; EFG_III; 1.
DR   Pfam; PF03764; EFG_IV; 1.
DR   Pfam; PF16004; EFTUD2; 1.
DR   Pfam; PF00009; GTP_EFTU; 1.
DR   Pfam; PF03144; GTP_EFTU_D2; 1.
DR   PRINTS; PR00315; ELONGATNFCT.
DR   SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR   SUPFAM; SSF50447; Translation proteins; 1.
DR   PROSITE; PS51722; G_TR_2; 1.
PE   4: Predicted;
KW   GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW   mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW   mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT   DOMAIN          123..384
FT                   /note="Tr-type G"
FT                   /evidence="ECO:0000259|PROSITE:PS51722"
FT   REGION          1..49
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        14..46
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   865 AA;  97894 MW;  143A08D3FA9453ED CRC64;
     MDTDLYDEFG NYIGPELDSD EEDGLGRDDD VDEDDDDDDE AGDQDDDHVG MEVVLHEDKK
     YYPTAEEVYG PEVETIVQEE DTQPLTEPII KPVKKKKFTL MEQELPETVY DMEFLADLMD
     NSELIRNITL CGHLHHGKTN FVDCLIEQTH PEIRKKDDRD LRYTDILFTE QERGVGIKST
     PVTMVLPDSK GKSYLFNIMD TPGHVNFSDE VTAGFRISDG MVLFIDAAEG VMLNTERLIK
     HAVQEKLAVT VCINKIDRLI LELKLPPTDA YYKLRHIVDE VNGLLSSQYS ICFTLGSFAK
     IYADTYGDIN YMEFAKRLWG DIYFNPKTRK FTKKAPTSNS QRSFVEFILE PVYKILSQVV
     GDVDTTLPRT LDELGIHLTK EELKLNIRPL LRLVCKKFFG DFTGLVDMCV QHIPSPQSGA
     RSKIEHTYTG GLDLDLGETM LECDPDGPLM CHTTKMYSTE DGVQFHAFGR VLSGTIHAGQ
     PVKVLGENYT LEDEEDSQIC TVGRLWISVA RYHIEVNRVP AGNWVLIEGV DQPIVKTATI
     TEPRGNDEAQ IFRPLKFNTA SVIKIAVEPV NPSELPKMLD GLRKVNKSYP SLTTKVEESG
     EHVILGTGEL YLDCVMHDLR KMYSEIDIKV ADPVVTFCET VVETSSLKCF AETPNKKNKI
     TMIAEPLEKG LAEDIENEVV QITWNRKKLG EFFQTKYDWD LLAARSIWAF GPDTTGPNIL
     VDDTLPSEVD KALLGYVKDS IVQGFQWGTR EGPLCDERSP LYTIKAFVPA IDSFGFETDL
     RTHTQGQAFS LSVFHHWQIV PGDPLDKSII IRPLEPQPAP HLAREFMIKT RRRKGLSEDV
     SISKFFDDPM LLELAKQDVV LNYPL
//
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