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Database: UniProt
Entry: A0A402D1W7_9BACT
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ID   A0A402D1W7_9BACT        Unreviewed;       582 AA.
AC   A0A402D1W7;
DT   08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT   08-MAY-2019, sequence version 1.
DT   24-JAN-2024, entry version 18.
DE   RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE            EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN   ORFNames=CCAX7_007640 {ECO:0000313|EMBL:BDI28713.1}, CCAX7_46670
GN   {ECO:0000313|EMBL:GCE56153.1};
OS   Capsulimonas corticalis.
OC   Bacteria; Armatimonadota; Armatimonadia; Capsulimonadales;
OC   Capsulimonadaceae; Capsulimonas.
OX   NCBI_TaxID=2219043 {ECO:0000313|EMBL:GCE56153.1};
RN   [1] {ECO:0000313|EMBL:GCE56153.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AX-7 {ECO:0000313|EMBL:GCE56153.1};
RA   Li J., Tonouchi A.;
RT   "Draft Genome Sequence of Capsulimonas corticalis strain AX-7.";
RL   Int. J. Syst. Evol. Microbiol. 0:0-0(2018).
RN   [2] {ECO:0000313|EMBL:BDI28713.1, ECO:0000313|Proteomes:UP000287394}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AX-7 {ECO:0000313|EMBL:BDI28713.1,
RC   ECO:0000313|Proteomes:UP000287394};
RA   Li J., Kudo C., Tonouchi A.;
RT   "Capsulimonas corticalis gen. nov., sp. nov., an aerobic capsulated
RT   bacterium, of a novel bacterial order, Capsulimonadales ord. nov., of the
RT   class Armatimonadia of the phylum Armatimonadetes.";
RL   Int. J. Syst. Evol. Microbiol. 69:220-226(2019).
RN   [3] {ECO:0000313|EMBL:BDI28713.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=AX-7 {ECO:0000313|EMBL:BDI28713.1};
RA   Li J., Tonouchi A.;
RL   Submitted (MAY-2022) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC         (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC         diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC   -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC       {ECO:0000256|ARBA:ARBA00007572}.
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DR   EMBL; AP025739; BDI28713.1; -; Genomic_DNA.
DR   EMBL; BHFQ01000013; GCE56153.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A402D1W7; -.
DR   KEGG; ccot:CCAX7_007640; -.
DR   InParanoid; A0A402D1W7; -.
DR   OrthoDB; 9767858at2; -.
DR   Proteomes; UP000287394; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR   CDD; cd07898; Adenylation_DNA_ligase; 1.
DR   CDD; cd07972; OBF_DNA_ligase_Arch_LigB; 1.
DR   Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR   InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR   InterPro; IPR036599; DNA_ligase_N_sf.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   PANTHER; PTHR45674:SF4; DNA LIGASE 1; 1.
DR   PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF04675; DNA_ligase_A_N; 1.
DR   SUPFAM; SSF117018; ATP-dependent DNA ligase DNA-binding domain; 1.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR   PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA replication {ECO:0000256|ARBA:ARBA00022705};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:BDI28713.1};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000287394}.
FT   DOMAIN          355..483
FT                   /note="ATP-dependent DNA ligase family profile"
FT                   /evidence="ECO:0000259|PROSITE:PS50160"
SQ   SEQUENCE   582 AA;  63159 MW;  149D42A10957E58E CRC64;
     MELLAASPLI PSLFITFAET AEAASETSKR LAKAALLAAY FSELSDDDLA RAARYLAGHV
     FPLRDQRTTN VGGAAMLGAI EEVTGAAPET LRENLVRLGD LGDVAREAFA ASQGAAQTPT
     LTLVSVGDAL ETLASTSGAK RKRELVVALL RPATALEAKY LVKLLAGDLR IGLQEGAIED
     AIARWRGMDV AAVQWANMLT GDLGETAILA RAGRLDSVSM RLFHPLKFML ATPAADLDDV
     ARQMPEAFVV EDKFDGIRAQ AHIARETPNV PEGVEEAPPA LHGVVRDGVR VALFSRTLDE
     ITESFPDLVA PLAKLAEGSP QGLILDGEIV PTQGDQILPF QELQKRLGRK TLSDAMRAEV
     PVCFVAYDAL FGDEQILIND PFARRRAVLE TAVPDSGPVR RAASVQFRDA ALLDEEFDAA
     RGRGNEGLMV KDPASLYKPG RRGREWLKIK RALATLDVVV TSVEVGNGGR RHLLSDYTFA
     VRASETDPAL LNIGKAYSGL TDAELQELSE WFRAHTIQEF AHGKVRVVEP KVVIEIAFDR
     VQASARHKSG YALRFPRILR IRDDKPVTQI DTLETVRKLA GE
//
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