ID A0A410PQD2_9CLOT Unreviewed; 635 AA.
AC A0A410PQD2;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE SubName: Full=PAS domain-containing protein {ECO:0000313|EMBL:QAT41109.1};
GN ORFNames=EQM05_13010 {ECO:0000313|EMBL:QAT41109.1};
OS Clostridium sp. JN-9.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=2507159 {ECO:0000313|EMBL:QAT41109.1, ECO:0000313|Proteomes:UP000287890};
RN [1] {ECO:0000313|EMBL:QAT41109.1, ECO:0000313|Proteomes:UP000287890}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JN-9 {ECO:0000313|EMBL:QAT41109.1,
RC ECO:0000313|Proteomes:UP000287890};
RA Ma S.;
RT "Draft genomes of a novel of Clostridium strains.";
RL Submitted (JAN-2019) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP035280; QAT41109.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A410PQD2; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000287890; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF119; SIGMA-54 INTERACTING PROTEIN; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000287890};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 203..247
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 332..560
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 635 AA; 71915 MW; C8974BED831CD3FB CRC64;
MFNTKKYLEE FINTGVINKN VRKSIADSWI RCKKYNVDYN GGIGRKVPPD VLSKKTVQNQ
QLLLVAKPIM EEMYKTVAGS GFSIILTDNT GCLLEVLGDE NVMEMANELN FIKGALWTER
EVGTNAIGTA LYMDEPIQTI AAEHYCKKHH KWSCSAATIH DENRNIIGCL DMSGNYNGAH
SHTLGMVLTG AFSIEKQLAF SVSNNLLNAT FQSISDGMLI LDHELKIIKV NENACSILEY
TRDEIIDINI NQVIKDVDFI NSLEHGEKPY YNMYCDFYKK KNKRIKCSMN AVPIVNNNIN
IGTVITFKTI KNINKFVNKV VGFNAAYSFS DIITKDKEMI KIIDYSKKAA LSNCNVIIEG
NSGTGKELFA QAIHNYSNKD GPFVAVNCAS IPKELMESEL YGYEKGAFTG AASEGHAGKF
ELADEGTIFL DEIGELPLDM QSKLLRVLDN KTVIRVGGNY ERKLNIRIIA ATNRNLKKEV
INKNFREDLF YRINVMNIKI IPLNERKGDI ELLSQYFINR LNIHNGKNKV IDSKFMKTLT
EYNWPGNVRE LENIVERSYY LSEGNVITAQ ELIDNGILNQ NKYQPDDNFI NMNTIERENI
KTALNKTNYN IANAAKLLGI SRATIYRKIK KYNLL
//
