ID A0A416JVD4_9FIRM Unreviewed; 591 AA.
AC A0A416JVD4;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=Peptidoglycan-binding protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=DW974_07285 {ECO:0000313|EMBL:RHQ17002.1};
OS Lachnospiraceae bacterium AM48-27BH.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae.
OX NCBI_TaxID=2292271 {ECO:0000313|EMBL:RHQ17002.1, ECO:0000313|Proteomes:UP000285913};
RN [1] {ECO:0000313|EMBL:RHQ17002.1, ECO:0000313|Proteomes:UP000285913}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AM48-27BH {ECO:0000313|EMBL:RHQ17002.1,
RC ECO:0000313|Proteomes:UP000285913};
RA Zou Y., Xue W., Luo G.;
RT "A genome reference for cultivated species of the human gut microbiota.";
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RHQ17002.1}.
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DR EMBL; QUFC01000010; RHQ17002.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A416JVD4; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000285913; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 3.10.20.800; -; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR038054; LD_TPept-like_central_sf.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR InterPro; IPR022029; YoaR-like_PG-bd.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF2; SLL0670 PROTEIN; 1.
DR Pfam; PF12229; PG_binding_4; 2.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF143985; L,D-transpeptidase pre-catalytic domain-like; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000285913};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 20..39
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 123..204
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 219..335
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 355..471
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 480..591
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 480..527
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 529..547
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 591 AA; 64031 MW; EEB52A925E79C011 CRC64;
MNEKQPRSRK KKPFPVKAVA IAAAVLVVCA GSGIGYYVYQ AQQYNHVFFP NTVINGMDVS
KKTVDQVKEM IASGIQGYSL VLKERGGDTE EIFGAEIDLK SEFDGSLENY LAAQEPMKWF
SHRSKKTEYE IPTMIAYDKT KLSEKIDGLV CLREDYAKAP ADAYMSEYQP GSGFSIVPEE
QGNLLKKDVL TEGIAHAIDN LSKELDLEEL DAYEKPEITS DHEGLQALAD KLNRYVNMTV
TYQFSDSRET LGGDMISQWI SVGADGTTVL LDRDQVAAYV KGLASKYDTA YKSKTLNTSY
GKTVTISKGF YGWKINQGEE TSQLYDIIQS GESQTREPVY SQKANSHGAN DYGNTYVEIN
LTAQHLFFYK DGKLVIESDF VSGNHAKGYD TPSGAYPLTY KQKDATLKGE NYRTPVSYWM
PFNGNIGMHD AKWRSSFGGQ IYMTNGSHGC VNLPPAVAKV IFQNISTGDP VLCYHLDGTG
SKSTSTGTKD TQAETKAAET TAAPTQAETT AAASAPSETT APASSPAPEP TTAAAPSPQP
SPSESSAAEP HPDPAESSPA PSPSETTAAE SKPSGPDQAV FETTREIGPG V
//
