ID A0A423PYP6_9GAMM Unreviewed; 581 AA.
AC A0A423PYP6;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 24-JAN-2024, entry version 19.
DE RecName: Full=Peptidoglycan-binding protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SAJA_04300 {ECO:0000313|EMBL:ROO30726.1};
OS Salinisphaera japonica YTM-1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Salinisphaerales;
OC Salinisphaeraceae; Salinisphaera.
OX NCBI_TaxID=1209778 {ECO:0000313|EMBL:ROO30726.1, ECO:0000313|Proteomes:UP000285310};
RN [1] {ECO:0000313|EMBL:ROO30726.1, ECO:0000313|Proteomes:UP000285310}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=YTM-1 {ECO:0000313|EMBL:ROO30726.1,
RC ECO:0000313|Proteomes:UP000285310};
RA Lai Q., Li C., Shao Z.;
RT "Salinisphaera japonica YTM-1 Genome Sequencing.";
RL Submitted (OCT-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ROO30726.1}.
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DR EMBL; AYKG01000010; ROO30726.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A423PYP6; -.
DR InParanoid; A0A423PYP6; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000285310; Unassembled WGS sequence.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR045380; LD_TPept_scaffold_dom.
DR InterPro; IPR002477; Peptidoglycan-bd-like.
DR InterPro; IPR036365; PGBD-like_sf.
DR InterPro; IPR036366; PGBDSf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR Pfam; PF01471; PG_binding_1; 1.
DR Pfam; PF20142; Scaffold; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF47090; PGBD-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000285310};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT SIGNAL 1..38
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 39..581
FT /note="Peptidoglycan-binding protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5019375055"
FT DOMAIN 90..231
FT /note="L,D-transpeptidase scaffold"
FT /evidence="ECO:0000259|Pfam:PF20142"
FT DOMAIN 259..315
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
FT DOMAIN 343..515
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 41..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 41..62
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 581 AA; 63663 MW; 1C3CC4E562DF7DC4 CRC64;
MSLFPSARRG VFAPRLAAGL VTSLTGLALL AGAPAVLAQD GNQTASETPG NNADNQPGQP
LNTPPEAKGK MAKAVARRLD GLTTDNEQIK AIKAFYQGNA YALAWFDKDG APTDNARDFW
QAIDRVSDQG LNPATYRDDR LGQVFTDNRR PGSPDQLADL DVDLSERFIA LAHDLHSGVI
DDPAIHVQWQ EPKQPLDFKS ALMAASQGNA AGKLADLAPQ QPAYQALVKA LARYQDIADQ
GGWPQIPEGE VLREDMKDPR IATLWQRLQV TGDAPDNTPA PKTYDSTIMS AMKHFQTRNG
LKVDGLLGPS TRDALNVTAD ERVDDIKLNM ERWRWMPASF GKRYIAVNVP AFELDAHDAD
GNDLSMKVIV GGSYNDKETP IFGDSMQYLV FRPFWNVPPS IAADEIVPEQ RKNPNYMASK
HYQIVRSFGP NAEPLAVTPA NVNAVAQGDL LVRQAGGPNN ALGLVKFIFP NDMAIYLHST
AATQLFDKTE RDLSHGCVRV ENPVALATFA LNGDPEWSRA DIDRAMHSGG RKRVDLPASI
PVYMLYWTAF VEDDTINFRA DLYDQDDKLD NALKAKSAVS L
//
