ID A0A430B9J1_9ENTE Unreviewed; 517 AA.
AC A0A430B9J1;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 13-SEP-2023, entry version 13.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=CBF28_01550 {ECO:0000313|EMBL:RSU16897.1};
OS Vagococcus carniphilus.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
OX NCBI_TaxID=218144 {ECO:0000313|EMBL:RSU16897.1, ECO:0000313|Proteomes:UP000288028};
RN [1] {ECO:0000313|EMBL:RSU16897.1, ECO:0000313|Proteomes:UP000288028}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SS1714 {ECO:0000313|EMBL:RSU16897.1,
RC ECO:0000313|Proteomes:UP000288028};
RA Gulvik C.A.;
RT "Vagococcus spp. assemblies.";
RL Submitted (MAY-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RSU16897.1}.
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DR EMBL; NGKB01000001; RSU16897.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A430B9J1; -.
DR OrthoDB; 9803205at2; -.
DR Proteomes; UP000288028; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Membrane {ECO:0000256|ARBA:ARBA00022989};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW Reference proteome {ECO:0000313|Proteomes:UP000288028};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}; Transmembrane {ECO:0000256|ARBA:ARBA00022692};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989}.
FT DOMAIN 333..426
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT REGION 90..120
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 517 AA; 58259 MW; B89247CC4A48B6CF CRC64;
MNLILLTIIG LIVGLTIGYF FAKSKHEKSI AGANNTASGI IEQAKKEAET LKKESLLEAK
EQNQNYRLEI ESELKEERVE LKNQENRLLQ KENNLDRKDD SLEKRERSLE EKEEKIDSKK
QLIDEREQEV SELIDQQKEE LEKIAALTKD DAKDIIMAET EKELTHERAI LVKESDQRAK
EEADRKAKNL LSLAIQRCAA DQVSELTVTV VNLPNDDMKG RIIGREGRNI RTLETLTGID
LIIDDTPEAV VLSGFDPIRR EVARMTLEKL IQDGRIHPAR IEEMVEKSRK EMDERIREYG
ENAAFEVGVH SLHPDLIKTL GRMRFRTSYG QNVLNHSIEV SKLAGVLAEE LGEDATLARR
AGLLHDIGKA LDHEVDGSHV EIGTELVSKY KENPVVINAV ASHHGDVEAT SVISVLVAAA
DALSAARPGA RSESLENYIK RLERLENIAN DFPGVDTSFA IQAGREIRVM VKPEEVTDDE
ATLLVRDVRK RIENELEYPG HIKVTVVREV RAVDYAK
//
