ID A0A432MMS9_9BACT Unreviewed; 1427 AA.
AC A0A432MMS9;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE RecName: Full=DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};
DE Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};
DE EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};
DE AltName: Full=RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};
DE AltName: Full=Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};
GN Name=rpoC {ECO:0000256|HAMAP-Rule:MF_01322,
GN ECO:0000313|EMBL:RUL88754.1};
GN ORFNames=TsocGM_05170 {ECO:0000313|EMBL:RUL88754.1};
OS Tautonia sociabilis.
OC Bacteria; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae;
OC Tautonia.
OX NCBI_TaxID=2080755 {ECO:0000313|EMBL:RUL88754.1, ECO:0000313|Proteomes:UP000280296};
RN [1] {ECO:0000313|EMBL:RUL88754.1, ECO:0000313|Proteomes:UP000280296}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GM2012 {ECO:0000313|EMBL:RUL88754.1,
RC ECO:0000313|Proteomes:UP000280296};
RA Toschakov S.V.;
RL Submitted (DEC-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:RUL88754.1, ECO:0000313|Proteomes:UP000280296}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GM2012 {ECO:0000313|EMBL:RUL88754.1,
RC ECO:0000313|Proteomes:UP000280296};
RA Kovaleva O.L., Elcheninov A.G., Van Heerden E., Toshchakov S.V.,
RA Novikov A., Bonch-Osmolovskaya E.A., Kublanov I.V.;
RT "Tautonia sociabilis, a novel thermotolerant planctomycete of
RT Isosphaeraceae family, isolated from a 4000 m deep subterranean habitat.";
RL Submitted (JAN-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|HAMAP-Rule:MF_01322,
CC ECO:0000256|RuleBase:RU004279};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|HAMAP-Rule:MF_01322};
CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000256|HAMAP-Rule:MF_01322};
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|HAMAP-Rule:MF_01322};
CC Note=Binds 2 Zn(2+) ions per subunit. {ECO:0000256|HAMAP-
CC Rule:MF_01322};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000256|HAMAP-Rule:MF_01322}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleBase:RU004279}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RUL88754.1}.
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DR EMBL; RYZH01000007; RUL88754.1; -; Genomic_DNA.
DR OrthoDB; 9815296at2; -.
DR Proteomes; UP000280296; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:UniProtKB-UniRule.
DR CDD; cd02655; RNAP_beta'_C; 1.
DR CDD; cd01609; RNAP_beta'_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 1.10.1790.20; -; 1.
DR Gene3D; 1.10.40.90; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 2.40.50.100; -; 3.
DR Gene3D; 3.30.60.280; -; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR HAMAP; MF_01322; RNApol_bact_RpoC; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR012754; DNA-dir_RpoC_beta_prime_bact.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR NCBIfam; TIGR02386; rpoC_TIGR; 1.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF54; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|HAMAP-Rule:MF_01322};
KW Magnesium {ECO:0000256|HAMAP-Rule:MF_01322};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW Rule:MF_01322};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695, ECO:0000256|HAMAP-
KW Rule:MF_01322}; Reference proteome {ECO:0000313|Proteomes:UP000280296};
KW Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW Rule:MF_01322};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|HAMAP-
KW Rule:MF_01322}; Zinc {ECO:0000256|HAMAP-Rule:MF_01322}.
FT DOMAIN 232..511
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT BINDING 67
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 69
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 82
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 85
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 457
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 459
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 461
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 812
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 888
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 895
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
FT BINDING 898
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01322"
SQ SEQUENCE 1427 AA; 160267 MW; A6D5BF0C96EC8273 CRC64;
MSMGESAYDR INDYGAVKIG LASPYDIRSW SFGEVKKPET INYRTYRPEK DGLFCERIFG
PEKDWECACG KYRGMKYKGM ICDRCGVKVT HSRVRRKRMG HIELAAPVVH IWFFKAMPSR
LGTLLDMRTT SLERIIYFQD YVVVDPGDTP LKERQLLTEE EFRKYRADYG DTFEADMGAE
AIRKLLLRLD LVELSKQLRQ ELVETNSRQK IKDLTKRLKV VESLRDSDNR PEWMVLEAIP
VIPPDLRPLV LLDSGNFATS DLNDLYRRII NRNNRLKKLV DLNAPEVIIR NEKRMLQQAV
DALFDNNRCK RPVLGSSNRP LKSLTDMIKG KQGRFRENLL GKRVDYSARS VIVVGPELKL
HQCGLPKKIA LELFQPFIIR RLKELGHADT IKSAKKMLER RSEEVWDILE EVIQNHPVLL
NRAPTLHRMG IQAFEPVLVE GNAIRIHPLV CRGFNADFDG DQMAVHLPLS IEAQVEAMTL
MMSTNNIFSP ANGSPIISPS QDIVMGCYYL TVQRPGEPGE YRKEDGREYG VFSSPMEVFQ
AASQKKVGTH AMIKMRLPAH KTLRGDGEKE FTPGMVISTT VGRVIFNDML PEKMPYYNMA
LGQKQLQMII ADCYQLLGRR QTIALLDNMK EIGFRESTRS GLSFATDDLK TPANKFKILE
DAEKEVVKNN KLYQRGIITE LERYNKVLDA WTHARELITQ QMMADLKSDV RDGEVYLNPI
YLMADSGARG GVEQIRQLAG MRGLMAKPSG KIIETPIKAN FREGLSVLEY FSSTHGARKG
LADTALKTAD SGYLTRKLAD VAQNVVITMH DCGTTQGVTK GTVYKGTSEK VEVAISQVVR
GRVSRVNIVN PITDEVVVRE NEMITVAAAK KLEEMQVEKI QVRSPMTCEA PLGVCQLCYG
MDLATGQLVE QGMAVGIIAA QSIGEPGTQL TMRTFHIGGT ATTGLEEKDL RSKRDGVVKL
VGINVVINDE GQRIALSRNG EIQLLDAKGR ELEKYDVPDG SIMHVEDGQE VTRGAILCEW
DPHNIPILAE VGGKVRFEDI IEGETLRVEQ DLRTGHHRRA IMEHKGDLHP QIILEDAEGK
ILDFYYIPER AGIEVQEGQQ IKAGTVLAKT PREARRTMDI TGGLPRITEL FEARRPKEPA
VIAEVDGKVE ILEEKRRGKR VIIVRNESGV EREHQVPHGK YMKVHTGSRV RAGEPLVEGP
LVPHDILRIS GEEAVQRYLL REIQNVYRAQ RVEIDDKHLE IIVSQMLRKV KIESVGDTNL
LPGSVIDKFE FRRTNQELLG CVKVKDPGDT DFRTGDIVPR ETFEKENARV EENGGAKAEW
VRPKPAAAST QLLGITKAAV QSESFISAAS FQETTKVLTE AALAGKVDYL VGLKENVILG
HLVPAGTGFK LHQDAEVRIR PEALEALAEK GPGFARYRDE APAAPAE
//
