ID A0A443N306_9MAGN Unreviewed; 994 AA.
AC A0A443N306;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=DExH-box ATP-dependent RNA helicase DExH9 {ECO:0000313|EMBL:RWR72881.1};
GN ORFNames=CKAN_00112600 {ECO:0000313|EMBL:RWR72881.1};
OS Cinnamomum micranthum f. kanehirae.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Magnoliidae; Laurales; Lauraceae; Cinnamomum.
OX NCBI_TaxID=337451 {ECO:0000313|EMBL:RWR72881.1, ECO:0000313|Proteomes:UP000283530};
RN [1] {ECO:0000313|EMBL:RWR72881.1, ECO:0000313|Proteomes:UP000283530}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Chaw 1501 {ECO:0000313|Proteomes:UP000283530};
RC TISSUE=Young leaves {ECO:0000313|EMBL:RWR72881.1};
RX PubMed=30626928; DOI=10.1038/s41477-018-0337-0;
RA Chaw S.M., Liu Y.C., Wu Y.W., Wang H.Y., Lin C.I., Wu C.S., Ke H.M.,
RA Chang L.Y., Hsu C.Y., Yang H.T., Sudianto E., Hsu M.H., Wu K.P., Wang L.N.,
RA Leebens-Mack J.H., Tsai I.J.;
RT "Stout camphor tree genome fills gaps in understanding of flowering plant
RT genome evolution.";
RL Nat. Plants 5:63-73(2019).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RWR72881.1}.
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DR EMBL; QPKB01000001; RWR72881.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A443N306; -.
DR STRING; 337451.A0A443N306; -.
DR Proteomes; UP000283530; Unassembled WGS sequence.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0006401; P:RNA catabolic process; IEA:InterPro.
DR CDD; cd18024; DEXHc_Mtr4-like; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 2.40.30.300; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF7; EXOSOME RNA HELICASE MTR4; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:RWR72881.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Plastid {ECO:0000256|ARBA:ARBA00022528};
KW Reference proteome {ECO:0000313|Proteomes:UP000283530}.
FT DOMAIN 81..237
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 312..548
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..66
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..34
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 994 AA; 113413 MW; 1F0B26BAD806BC91 CRC64;
MGSQKRKSIE NPSSPESLSP HKLQRSNGSS TSLEGEPIAC LHDISYPENY VPRPKPTTQD
GPTTPAKEFE FKLDPFQSEA IKCLDNGESV MVSAHTSAGK TVVALYAIAM SLRDKQRVIY
TSPIKALSNQ KYREFKEEFS DVGLMTGDVT IEPNASCLVM TTEIWRSMQY KGSEITREVA
WIIFDEVHYM RDRERGVVWE ESIVMAPKNS RFVFLSATVP NAKEFADWVA KVHRQPCHIV
YTDYRPTPLQ HYIFPSGADG LYLVVDEKGK FREDSFQKAL NALVPAGEGD KRRENEKWHK
GVRAGKSGEQ SDIFKLVKMI TQRQYDPVIL FSFSKRECEF LAMQMAKMDL TEDDEKENIE
KIYWSAMDML SDDDKKLPQV SNMLPLLKRG IGVHHSGLLP ILKEVIEILF QEGLIKCLFA
TETFSIGLNM PAKTVVFTNV RKFDGDKFRW ISSGEYIQMS GRAGRRGIDE RGICILMVDE
KLEPSTAKMM LKGSADCLNS AFHLSYNMLL NQMRCEDGDP ENLLRHSFYQ FQSDRALPDL
EKQVKDLKEE RDSIVIEEED SLNDYYTLLE QYKSLKKEVR DIVLSPKYCL PFLQPGRLVR
IQCTSDEKSL SFSTEDQTTW GVIINFERAK GLAEDDASRK PEDANYTVDV LTRCKVVKDS
IGKKSIKIVP LRDPGEPVVV SLPISQIDNL SGVRMIIAKD LFPVEVRENT LKKVLEVLER
FAKQGMVPLD PEEDMKIQRK SYKKAIRRIE ALESLFDKHE VAKSPLIQQK LKALHTKKVL
MAKIQSIKEV IRSSTALAFK DELKARKRVL RKLRYVTSDD VLELKGKVAC EISSADELTL
TELMFNGVLK DVNVEEMVAL LSCFVWREKL QDSQKPKEEL DLLFSQLQAA ARMVAETQLQ
CKVQIDVESF VNSFRSDIME AVYAWAKGSK FYEIMEITQV FEGSLIRAIR RLEEVLQQLI
LAAKSIGETQ LELKFEEAVT KIKRDIVFAA SLYL
//
