ID A0A445F2J5_GLYSO Unreviewed; 974 AA.
AC A0A445F2J5;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=Phytochrome type A isoform D {ECO:0000313|EMBL:RZB43042.1};
DE SubName: Full=Phytochrome type A isoform E {ECO:0000313|EMBL:RZB43043.1};
DE SubName: Full=Phytochrome type A isoform F {ECO:0000313|EMBL:RZB43044.1};
GN ORFNames=D0Y65_053592 {ECO:0000313|EMBL:RZB43043.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB43043.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB43043.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB43043.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region. Photoconversion of Pr to Pfr
CC induces an array of morphogenic responses, whereas reconversion of Pfr
CC to Pr cancels the induction of those responses. Pfr controls the
CC expression of a number of nuclear genes including those encoding the
CC small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B
CC binding protein, protochlorophyllide reductase, rRNA, etc. It also
CC controls the expression of its own gene(s) in a negative feedback
CC fashion. {ECO:0000256|ARBA:ARBA00002479}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB43043.1}.
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DR EMBL; QZWG01000020; RZB43042.1; -; Genomic_DNA.
DR EMBL; QZWG01000020; RZB43043.1; -; Genomic_DNA.
DR EMBL; QZWG01000020; RZB43044.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445F2J5; -.
DR Proteomes; UP000289340; Chromosome 20.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 218..390
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 616..686
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 689..745
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 749..801
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 974 AA; 108256 MW; D5A40395C0A4CD8D CRC64;
MSTSRPSQSS SNSGRSRRSA RAMALATVDA KLHATFEESG SSFDYSSSVR ISGTADGVNQ
PRHDKVTTAY LHHMQKGKMI QPFGCLLALD EKTCKVIAYS ENAPEMLTMV SHAVPSVGDH
PALGIGTDIK TLFTAPSASA LQKALGFAEV SLLNPVLIHC KTSGKPFYAI IHRVTGSMII
DFEPVKPYEV PMTAAGALQS YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM
AYKFHEDDHG EVIAEITKPG LEPYLGLHYP ATDIPQASRF LFMKNKVRMI VDCHAKHVRV
LQDEKLPFDL TLCGSTLRAP HSCHAQYMAN MDSIASLVMA VVVNDNEEDG DTDAIQPQKR
KRLWGLVVCH NTTPRFVPFP LRYACEFLAQ VFAIHVNKEI ELEYQIIEKN ILRTQTLLCD
LVMRDAPLGI VSESPNIMDL VKCDGAALIY KNKVWRLGVT PSESQIREIA FWLSEYHMDS
TGFSTDSLSD AGFPSALSLG DVVCGMAAVR VTAKDVVFWF RSHTAAEIRW GGAKHEAGEK
DDGRRMHPRS SFKVFLDVVK ARSLPWKEYE IDAMHSLQLI LRNAFKDTES MDLNTKAINT
RLSDLKIEGM QELEAVTSEI VRLIETATVP ILAVDVDGLV NGWNIKIAEL TGLPVGEAMG
KHLLTLVEDS STDRVKKMLN LALLGEEEKN VQFEIKTHGS KMDSGPISLV VNACASRDLR
DNVVGVCFVA HDITAQKNVM DKFTRIEGDY KAIVQNRNPL IPPIFGTDEF GWCCEWNPAM
TKLTGWKREE VMDKMLLGEL FGTHMAACRL KNQEAFVNLG VVLNKAMTGL ETEKVPFGFF
ARNGKYVECL LSVSKKLDVE GLVTGVFCFL QLASPELQQA LHIQRLSEQT ALKRLNALSY
MKRQIRNPLC GIIFSRKMLE GTALGTEQKQ LLRTSAQCQQ QLSKILDDSD LDSIIDGYDI
SEFVLFPLIY IHVV
//
