ID A0A445FKB7_GLYSO Unreviewed; 1005 AA.
AC A0A445FKB7;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE SubName: Full=Phytochrome type A isoform C {ECO:0000313|EMBL:RZB49231.1};
GN ORFNames=D0Y65_052275 {ECO:0000313|EMBL:RZB49231.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB49231.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB49231.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB49231.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB49231.1}.
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DR EMBL; QZWG01000019; RZB49231.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445FKB7; -.
DR Proteomes; UP000289340; Chromosome 19.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 224..397
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 623..693
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 756..808
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT REGION 1..28
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 46..75
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..27
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1005 AA; 112171 MW; 60D4C223368121D2 CRC64;
MSSSRPSQSS SNNSGRSRTS RLSARRMAQT TLDAKLHATF EESGSSFDYS SSVRMSPAGT
VSGDHQPRSD RATSSYLHQT QKIKLIQPFG CLLALDEKTC KVIAYSENAP EMLTMVSHAV
PSVGDHPALG IGTDIRTIFT APSSAAIQKA LRFGDVSLHN PILVHCKTSG KPFYAIIHRV
TGSVIIDFEP VKPHEVPMTA SGALQSYKLA AKAITRLESL TTGNMETLCN TMVREVFELT
GYDRVMAYKF HEDDHGEVIA EVKRPGLEPY LGLHYPATDI PQATRFLFMK NKVRMIVDCC
AKHVNVLQDK KIPFDLTLCG STLRAAHSCH LQYMENMNSS ASLVMAVVVN DNDEDGDSSD
AVQPQKSKRL WGLVVCHHTT PRFVPFPLRY ACQFLAQVFA VHVSKELEIE YQIIEKNILQ
TQTLLCDMLV QGEPLGIVSQ SPNIMDLVKC DGAALLYKNK VWRLGVTPSE SQIKEIALWL
FECHEDSTGF CTDSLSDAGF PGAAALGDIA CGMAAARIAS KDILFWFRSH TASEIRWGGA
KHEPGERDDG RRVHPRSSFK AFLEVVKTRS LPWKTYETDA IHSLQLILRD AFKETQSMEI
STYAIDTRLG DLKIEGMQEL DAVTSEVVRL IETATVPILA VDVNGMINGW NTKIAELTGL
PVDEAIGKHL LTLVEDFSVD RVKKMLDMAL QGEEERNVQF EIQTHHMKID SGPISLVVNA
CASRDLQDNV VGVCFLAQDI TAQKTMMDKF TRIEGDYKAI VQNPNPLIPP IFGTDEFGWC
CEWNSAMAKL TGWKREEVMD KMLLGEVFGT QIACCRLRNH EAVVNFSIVL NTAMAGLETE
KVPFGFFARD GKHVECILSM TKKLDAEGVV TGVFCFLQLA SAELQQALHI QRISEQTSLK
RLKDLTYLKR QIQNPLYGIM FSRKLLEGTE LGAEQKQFLQ TGIRCQRQIS KILDDSDLDS
IIDGYDICEC VASSFYFYLP FVWYFEHLST RVPIKSYNFV FHNHT
//
