ID A0A445G8M4_GLYSO Unreviewed; 889 AA.
AC A0A445G8M4;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE SubName: Full=Protein RRP6-like 2 isoform A {ECO:0000313|EMBL:RZB57545.1};
GN ORFNames=D0Y65_046290 {ECO:0000313|EMBL:RZB57545.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB57545.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB57545.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB57545.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the exosome component 10/RRP6 family.
CC {ECO:0000256|ARBA:ARBA00043957}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB57545.1}.
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DR EMBL; QZWG01000017; RZB57545.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445G8M4; -.
DR SMR; A0A445G8M4; -.
DR OrthoDB; 2880475at2759; -.
DR Proteomes; UP000289340; Chromosome 17.
DR GO; GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR012588; Exosome-assoc_fac_Rrp6_N.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR InterPro; IPR049559; Rrp6p-like_exo.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR Pfam; PF08066; PMC2NT; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 3: Inferred from homology;
KW Exosome {ECO:0000256|ARBA:ARBA00022835};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT DOMAIN 478..558
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 573..603
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 694..889
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 749..775
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 831..850
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 851..870
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 889 AA; 98933 MW; 8434A323D95B8D5C CRC64;
MNVDHDQPPS ATKAQALQTL TAGPLSSSVA KLAASSRCIP SDKDFHFYRN FEEFKVPVEE
IARESRSMLE AIGAAAAHAA FPDNDVDDDA AYDWLVNAND DVLERFDASV DEFRKVRQEE
EETGRPAMHP MEEDGFQLVT GKKKKGGKGN VTPAATGSEV AAVAPPGVTV ATKDKKTMGP
KSKVPFHIPT IRRPQDEYNI VVNNANMPFE HVWLQRSDDG LSFIHPLEKL SVLNFVDTNL
GDVVPVKPPS IESTPFKLVE EVKDLKELAA KLRSVNEFAV DLEHNQYRSF QGLTCLMQIS
TRTEDFIVDT LKLRIHIGPY LREIFKDPAK RKVMHGADRD IAWLQRDFGI YICNLFDTHQ
ASKLLNLERN SLEHILHHFC EVTANKEYQN ADWRLRPLPD EMIRYAREDT HYLLYIYDLM
RIKLFALSKE SESSESSDTP LVEVYKRSYD VCIQLYEKEL LTENSYLHIY GLQGAGFNAQ
QLAIVSGLCE WRDIVARAED ESTGYVLPNK SVLEIAKQMP LTTSKLRRLV KSKHPYVEHN
LDTVVSIIRH SIQNAASFEE AAQQLKEAQA VTASDVVPVT DGTEDPPSHT RHSKESSQHQ
ATSVPIKIKS NSLIFEPPKD SLTIAEQNRD ANVGALSTAK GNGAAVQVLK KPTGAFGALL
GSSASKRKLG PGKGKEEIKL EQIRSSVSLP FHSFLGSSEK SEPTEEIPSV ASEMSEPQKP
VSDVVSASPV DEIIMLESDT GAKDMEQNNL ENSNEHREKD SVVSTSGKED EDEPVSLSEL
SSNLKKCFHS NDQNNKIRQP KKTEQPSGLV QLKPFDYEAA RKHVKFGEHK KHASSKGSDG
HMEVVEDSGS KKQRSTTGQG QASDLSKQLP QGRRRQAFPA SGNRSSTFR
//
