ID A0A445GUG7_GLYSO Unreviewed; 1229 AA.
AC A0A445GUG7;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=DNA ligase 4 isoform B {ECO:0000313|EMBL:RZB64929.1};
GN ORFNames=D0Y65_041123 {ECO:0000313|EMBL:RZB64929.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB64929.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB64929.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB64929.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC {ECO:0000256|ARBA:ARBA00007572}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB64929.1}.
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DR EMBL; QZWG01000015; RZB64929.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445GUG7; -.
DR Proteomes; UP000289340; Chromosome 15.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR GO; GO:0051103; P:DNA ligation involved in DNA repair; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR CDD; cd07903; Adenylation_DNA_ligase_IV; 1.
DR CDD; cd07968; OBF_DNA_ligase_IV; 1.
DR Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR044125; Adenylation_DNA_ligase_IV.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR InterPro; IPR036599; DNA_ligase_N_sf.
DR InterPro; IPR029710; LIG4.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR45997; DNA LIGASE 4; 1.
DR PANTHER; PTHR45997:SF1; DNA LIGASE 4; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR Pfam; PF04675; DNA_ligase_A_N; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF117018; ATP-dependent DNA ligase DNA-binding domain; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:RZB64929.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340}.
FT DOMAIN 862..1002
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
FT REGION 1129..1155
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1136..1153
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1229 AA; 140554 MW; 6BE02113F0756817 CRC64;
MTEQTKLSVL CSLFTWTQRS KSAAKKRAKF RKFLDAFCTD HNFFPAVRLL LPNLDRERGS
YGLKESVLAT SLIDALGISR DSPDALRLLN WRKGGAATGP TAGNFALVAS EVLQRRQGTA
SGGLTIRELN ELLDRLASAE NRAEKILVLS TLIQKTNAQE MKWIIMIILK DLKLGISEKS
IFHEFHPDAE DLFNVTCDLK LVCEKLRDRN QRHKRQDIEV GKAVRPQLAK RVANATEAWK
KGDPLAPLLF NIVVEGLTGL MRTAISKNMF SSYQVGSQKE DVNILQYADD TLFFGAVTTD
NVRVLKSILR CFEMVSGLKI NYAKSHCGCI GKSEGWCRDA AQFLNYSQLD IPFSYLGIPV
GTSSKSWSVW QPIIRKFEAK LAKWKQRCLS MGGRITLINS GLTALPIYLL SFFRIPKKVV
HKIVSIQRNF LWGGGIEANK IPWVNWDTVC LPKNKGGLGI KDLIKFNEAL LGKWGWELVN
NQNQLWARIL LSKYGGWNAL LFGRNSGDLS HWWKDLETVF QQQDSNSINN NLRWKVGNGV
KIRFWKDKWR DDDLTLQDKY PTLYQMSTQQ NSPINLMGHF VEDRWDWKIN WRRNFFDHQI
DMVAAFMAEI DDVHIHRSSM DILTWRDDPS GSYSTKSVYN LLKDAGNIVT EDSASKIIWN
LKIPPRAIAF SWRLFQNRLP TKANLRRRMS AMSCSLAPKL GVYGYLSPYL ISVRSLNLIP
SIHRVTTDHL LQPKLWSRIM HVSVSFMGRM WLLSANLMVT AFKFIKMELK YISSQGKCHH
NVTQYGFLFV FPWVFHLPWN FIDHSEYAHA MSEIIIQNVL VDRCILDGEM LVWDTSLKRF
AEFGSNQEIG TSFLDAVMLY PYVAFDILYF GDTSLIHQTL KERHEILCKI VRPVKGRLEI
LVPNAGINSH ISSGEPCWSF IAHNVDEVER FFKETIENRD EGIVLKDHSS KWEPSDRSGK
WLKLKPEYIQ AGSDLDVLII GGYYGSGRRG GEVAQFLVGL AERPSPNTHP KQFISFCRVG
TGLSDDELDA VVTKLKPYFR KYEYPKKRPP SFYQVTNHSK ERPDVWVDSP EKSIILSITS
DIRTIESEVF SAPYSLRFPR IDRVRYDKAW YECLDVQSFI ELVHSSNGTT QRDTEYGSKQ
DSKPKRSKSS TRGEKKNLSI VPSHLIQTDV SSIKGGSLIF SNMMFCILKN LVSYYLIKLS
DEVFEEMSNA REVLLAKANS PFNYMKAGS
//
