ID A0A445IMB2_GLYSO Unreviewed; 1061 AA.
AC A0A445IMB2;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=Phytochrome A isoform E {ECO:0000313|EMBL:RZB87183.1};
GN ORFNames=D0Y65_027040 {ECO:0000313|EMBL:RZB87183.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB87183.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB87183.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB87183.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB87183.1}.
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DR EMBL; QZWG01000010; RZB87183.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445IMB2; -.
DR Proteomes; UP000289340; Chromosome 10.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 217..389
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 623..693
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 756..808
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 907..1061
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 42..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..20
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1061 AA; 117924 MW; 1BDCAE1832DDC688 CRC64;
MSTSRPSQSS SNSRRSRHSA RMAQATVDAK IHATFEESGS SFDYSSSVRV SGTADGVNQP
RSDKVTTAYL NHMQRGKMIQ PFGCLLAIDE KTCKVIAYSE NAPEMLTMVS HAVPSVGDHP
ALGIGTDIKT LFTAPSVSGL QKALGCADVS LLNPILVHCK TSGKPFYAIV HRVTGSLIVD
FEPVKPYEVP MTAAGALQSY KLAAKAITRL QSLPSGNMER LCDTMVQEVF ELTGYDRVMA
YKFHEDDHGE VIAEITKPGL EPYLGLHYPA TDIPQASRFL FRKNKVRMIV DCHAKHVRVL
QDEKLQFDLI LCGSTLRAPH SCHAQYMANM DSIASLVLAV VVNDNEEDGD TDAVQPQKRE
RLWGLVVCHN TTPRFVPFPL RYACEFLAQV FAVHVHKEIE LEYQIIEKNI LRTQALLCML
MRDAPLGIVS ESPNIMDLVK CDGAALIYRN KVWRLGVTPS EPQIREIALW LSEYHMDSTG
FSTDSLFDAG FPSALSLGDV VCGMASVRVT AKDMVFWFRS HTAAEIRWGG AKHEAGEKDD
SRRMHPRSSF KAFLEVVKAR SLPWKEYEMD AIHSLQIILR NAFKEDTESL DLNAKAINTR
LSDLKIEGIN DLKIERMQEL EAVTSEIVRL IDTATVPILA VDVDGLVNGW NIKIAELTGL
PIGEATGKHL LTLVEDSSTD RVKKMLNLAL LGEEEKNVQF EIKTHGSKMD SGPISLVVNA
CASRDLRDNV VGVCFVAHDI TAQKNVMDKF IRIEGDYKAI VQNRNPLIPP IFGTDEFGWC
CEWNPAMMKL TGWKREEVMD KMLLGEIFGT QMAACRLKNQ EAFVNLGVVL NKAMTGSETE
KVPFGFFARN GKYVECLLSV SKKLDVEGLV TGVFCFLQLA SPELQQALHI QRLSEQTASK
RLNALSYMKR QIRNPLCGIV FSRKMLEGTD LGTEQKQLLR TSAQCQQQLS KILDDSDLDT
IIDGYLDLEM AEFTLHEVLV TSLSQVMTKS NGKSIRIVND VAGHIMMETL YGDSLRLQQV
LADFLLISIN FTPNGGQVVV AGSLTKEQLG KSVHLVKLEL R
//
