ID A0A445IYP5_GLYSO Unreviewed; 1188 AA.
AC A0A445IYP5;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 24-JAN-2024, entry version 15.
DE SubName: Full=Regulator of nonsense transcripts UPF2 {ECO:0000313|EMBL:RZB91247.1};
GN ORFNames=D0Y65_023595 {ECO:0000313|EMBL:RZB91247.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB91247.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB91247.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB91247.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB91247.1}.
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DR EMBL; QZWG01000009; RZB91247.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A445IYP5; -.
DR SMR; A0A445IYP5; -.
DR OrthoDB; 276824at2759; -.
DR Proteomes; UP000289340; Chromosome 9.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR InterPro; IPR039762; Nmd2/UPF2.
DR InterPro; IPR007193; Upf2/Nmd2_C.
DR PANTHER; PTHR12839; NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2; 1.
DR PANTHER; PTHR12839:SF7; REGULATOR OF NONSENSE TRANSCRIPTS 2; 1.
DR Pfam; PF02854; MIF4G; 3.
DR Pfam; PF04050; Upf2; 1.
DR SMART; SM00543; MIF4G; 3.
DR SUPFAM; SSF48371; ARM repeat; 3.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340}.
FT DOMAIN 56..278
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 468..656
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 671..872
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT REGION 311..342
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 375..460
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 900..1014
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1021..1040
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1049..1107
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1147..1188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 327..341
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 376..419
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 420..460
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 913..935
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 936..989
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1049..1075
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1084..1107
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1188 AA; 134729 MW; 1483F0DEA604DFC0 CRC64;
MDHQEDESNS KQDDEEAVAR LEEIKKSIEA KLALRQSNLN PERPDSGFLR TLDSSIKRNT
AVIKKLKQIN EEQREALMDE LRSVNLSKFV SEAVAAICDA KLRSSDIQAA VQICSLLHQR
YKDFAPSLVQ GLLKVFSPGK PGDESDTDRN LKAMKKRSSL KLLLELFFVG VIEDGGIFIN
IIKDLTSGEQ LKDRDAAQTS LTLLSSFARQ GRIFLGLSVS GPEIHEEFFK GLNITADQKK
VLRKACYSFY DAAAELLQSE HSSLRLMEHE NSKILNAKGE LSDENIASYE KLRKSYDHLY
RNISSLAEAL DMQPPVMPED GHTTRVTSGE DGISSASGKD SSVVEPIWDD EDARTFYECL
PDLRAFVPAV LLGETEPKSS EQSAKNQDQT TEILPESDKG QQTTHESGEV STESSALPEA
ESTERVKDKE EKDKSKELDR EKEKEKENDK KGENEKDKLR SVEGTNLDAL LQRLPGCVSR
DLIDQLTVEF CYLNSKSSRK KLVRALFNVP RTSLELLPYY SRMVATLSTC MKDVSSILLQ
MLEEEFNFLI NKKDQMNIET KIRNIRFIGE LCKFKISPPG LVFSCLKACL DDFTHHNIDV
ACNLLETCGR FLYRSPETTI RMANMLEILM RLKNVKNLDP RHSTLVENAY YLCKPPERSA
RVAKVRPPLH QYIRKLLFSD LDKSTIEHVL RQLRKLPWNE CEPYLLKCFM KVYKGKYGQI
HLIASLAAGL SRYHDEFAVA IVDEVLEEIR VGLELNDYGM QQRRIAYMRF LGELYNYEHV
DSSVIFETLY LILIYGHGTQ EQDVLDPPED CFRIRLIITL LETCGHYFDR GSSKRKLDRF
LIHFQRYILS KGALPLDIEF DLQDLFVDLR PNMVRHNSIE EVNAALVELE EHDRIVFADK
ASSEKHSDTE KSLSRTTSTT TVVGNGQSID NGMEENGVQD DNDSETDSGS DTIDVEGHDD
EELDEENHDD GCETEDDDDD DDDGPGPASD EEDEVHVRQK MTQVDPLEEA NFDQELKAVV
QESMEQRRQE LRGRPTLNMM IPMNVFEGSA KDHHGRGVGG ESGDEPLDED TGGNKEVQVR
VLVKRGNKQQ TKQMFIPRNS SLVQSTKQKE AAELQEKEDI KRLVLEYNDR EEEELNGLGT
QATNWMQSVG YKGGGRGSSL EGNSGRGSGS RHRHHNYSGS GIYYSRRK
//
