ID A0A452GGM3_9SAUR Unreviewed; 689 AA.
AC A0A452GGM3;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 24-JAN-2024, entry version 19.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
OS Gopherus agassizii (Agassiz's desert tortoise).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
OC Testudinoidea; Testudinidae; Gopherus.
OX NCBI_TaxID=38772 {ECO:0000313|Ensembl:ENSGAGP00000000725.1, ECO:0000313|Proteomes:UP000291020};
RN [1] {ECO:0000313|Proteomes:UP000291020}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28562605;
RA Tollis M., DeNardo D.F., Cornelius J.A., Dolby G.A., Edwards T.,
RA Henen B.T., Karl A.E., Murphy R.W., Kusumi K.;
RT "The Agassiz's desert tortoise genome provides a resource for the
RT conservation of a threatened species.";
RL PLoS ONE 12:e0177708-e0177708(2017).
RN [2] {ECO:0000313|Ensembl:ENSGAGP00000000725.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (SEP-2023) to UniProtKB.
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DR AlphaFoldDB; A0A452GGM3; -.
DR STRING; 38772.ENSGAGP00000000725; -.
DR Ensembl; ENSGAGT00000000816.1; ENSGAGP00000000725.1; ENSGAGG00000000616.1.
DR Proteomes; UP000291020; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016032; P:viral process; IEA:InterPro.
DR Gene3D; 1.10.1200.30; -; 1.
DR Gene3D; 1.10.375.10; Human Immunodeficiency Virus Type 1 Capsid Protein; 1.
DR Gene3D; 1.10.150.490; Retroviral GAG p10 protein; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR038124; B_retro_matrix_sf.
DR InterPro; IPR045345; Gag_p24_C.
DR InterPro; IPR008916; Retrov_capsid_C.
DR InterPro; IPR008919; Retrov_capsid_N.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR40389; ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN-RELATED; 1.
DR PANTHER; PTHR40389:SF3; IGE-BINDING PROTEIN; 1.
DR Pfam; PF00607; Gag_p24; 1.
DR Pfam; PF19317; Gag_p24_C; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 2.
DR SUPFAM; SSF47353; Retrovirus capsid dimerization domain-like; 1.
DR SUPFAM; SSF47943; Retrovirus capsid protein, N-terminal core domain; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000291020};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 586..601
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 619..634
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 644..689
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 689 AA; 76260 MW; 65982FE8096369A7 CRC64;
MGSALSAEEK TVHDFLLRIA EKQGEKISPE PLSHLLKWGQ RRGFFVTLNT VFDKTVWERL
GSDLWESVAH GSKEAVSLSQ IWCKTKKIVE TLAAEAGVRA AVDDIFRSKK ADESPMVLPE
PPVVLPVGAK EFFGREEVIV PTAPGCDPDG PDLDPHTVPL PQDSEGSFEN MDTDRTPFTE
STEFREEMKR QGHQLQEMLD KLSRMAGETS SPQSHLLKTL QGYENYKAKP PDKPLQSSNN
MVLCPRCGLW GCDAHCTGGS PPSTHQLPGR PLAAESSKQA SPFLTKPLAY SSDAAGMGSP
DLVRRWYGLI KEAHIKGEFL PNAFPVITPD SNNPARRQWA PLDWKLVREA QKAIMSYGMN
NPYVQSLVEQ VFVGQAMCPY DSSKFADMLL TPTQKLLWKD NWSRRVEMAI LHNIDLDENN
PLRYATQDML MGSGVYADPQ RQARLDPRIL QQSQGLALAA FKDVPQMGKL IPPYAKIVQD
PSEPYSTFLD RLREAIDRSP NLTAEAKAAV GLDIATQNAN AICRRILATL PKTASLTEMV
EACNRASVYE ETDKAEIHAK AHASALAVAL RPLVRPSKPS RPSGVCFACG KPGHMKKDCP
SKNIRVGTEN ATKAFAGTCN RCDKFGHRAS ECRSCFKKDG MPLQGNGMRS AHRGGAKTQE
SPNPKPVVWN TLQEPPEEVP EWTWPQQQM
//
