ID A0A452J1U0_9SAUR Unreviewed; 1919 AA.
AC A0A452J1U0;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS51805};
OS Gopherus agassizii (Agassiz's desert tortoise).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
OC Testudinoidea; Testudinidae; Gopherus.
OX NCBI_TaxID=38772 {ECO:0000313|Ensembl:ENSGAGP00000034349.1, ECO:0000313|Proteomes:UP000291020};
RN [1] {ECO:0000313|Proteomes:UP000291020}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=28562605;
RA Tollis M., DeNardo D.F., Cornelius J.A., Dolby G.A., Edwards T.,
RA Henen B.T., Karl A.E., Murphy R.W., Kusumi K.;
RT "The Agassiz's desert tortoise genome provides a resource for the
RT conservation of a threatened species.";
RL PLoS ONE 12:e0177708-e0177708(2017).
RN [2] {ECO:0000313|Ensembl:ENSGAGP00000034349.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (SEP-2023) to UniProtKB.
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DR STRING; 38772.ENSGAGP00000034350; -.
DR Ensembl; ENSGAGT00000038880.1; ENSGAGP00000034338.1; ENSGAGG00000024403.1.
DR Ensembl; ENSGAGT00000038882.1; ENSGAGP00000034340.1; ENSGAGG00000024403.1.
DR Ensembl; ENSGAGT00000038885.1; ENSGAGP00000034343.1; ENSGAGG00000024403.1.
DR Ensembl; ENSGAGT00000038888.1; ENSGAGP00000034346.1; ENSGAGG00000024403.1.
DR Ensembl; ENSGAGT00000038891.1; ENSGAGP00000034349.1; ENSGAGG00000024403.1.
DR Ensembl; ENSGAGT00000038892.1; ENSGAGP00000034350.1; ENSGAGG00000024403.1.
DR Proteomes; UP000291020; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR14955; RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20; 1.
DR PANTHER; PTHR14955:SF6; RETINOIC ACID-INDUCED PROTEIN 1; 1.
DR Pfam; PF13771; zf-HC5HC2H; 1.
DR SMART; SM00249; PHD; 1.
DR PROSITE; PS51805; EPHD; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000291020};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 1793..1915
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 1..39
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 177..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 261..282
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 318..397
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 442..492
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 516..550
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 638..661
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 789..811
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 871..915
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 990..1009
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1189..1239
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1283..1302
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1504..1597
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1732..1786
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1809..1828
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 177..235
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 318..368
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 380..397
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 459..490
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 900..915
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1512..1534
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1535..1557
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1558..1586
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1749..1767
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1919 AA; 210611 MW; 095363089DC9FAA3 CRC64;
MQSFRERCGF HGNQQNYQQT SQDTSRLENY RHQSQAGPNC ERQRLVAKEY YSQQQLPYPG
YENSAVEKYH RGNKQLPGQQ LQGRPAFSNY AVQENSPYPA RYSGEESLQP WGAQQQSLAG
GVAKYEENLM KKSPAPAGSR QYHEQTAQLP FRTHSLHLPQ QPPQPPALTY PKLQRQKIQN
DVSSPMSFSQ TGHFTQHSQS QFPASSTYSS VPGGSQAAHS YKSCTAPSSQ QHERPLGGAA
NLASGQRVQN LHGYQANRIS YDQQQQPQQQ PQQQPLQGRH HAQETLHYQN LAKYQHYNQP
GQTYCQTDAP VRTPEQYYQT FSPSSSHSPA RSVGRSPSYS STPSPLMPNL ENFQYSQQSL
NTGSFPAGIT DHSHFMPLLN PSPTDGTSPD AQSGNCKNLQ KEKIPENLLS DLSLQSLTAL
TSQVENISNT VQQLLLSKSA VPQKKGIKNP PRTPEQLKGQ HCSPESSTYS AEQVGTPLSD
PLSTPQSVHA EAQDADYLSG SEDQLERNFL YCGQSRSPAR VNSNSKAKPE SVSTCSVTSP
DDMSTKSDDS FQSIHASLPL ETFTKYMTNE RECPRLLLST LSQEELASEI IVLQDAINEK
ADKAWANSPA LNKDSAKSPF HVENHRTCLD SMVKSTWSNQ GNSGTHTEPL KLDKASGGNN
SKDFSEEVYE NAQVEFTTTE TKNALKVTGS LAYNSKPNIP AATSSSGAAS YSCYSNTTAN
SVDSENAMES FDWPDESISE SCLRWKELGP CLQSSDLSKG LFHSKLAGSC EEKKNACCMD
ICDGEQPAKN EQAEDFSQQQ MGEEEEDTLT YDEATKADSE RWLEDTRHCC SGGDFSEIPM
ISSPDLKESD LEPEEYSSLC ELASSEQKSV IYDTSPPKPP ENAAVLSSKD VPVSAEETVS
AVEKENSGPS SRLSGQSVIL LGPAVGTETK VKSWFESSLP HIKPEEDTTV GESVLQEKTE
TETTLLVKVK KQMLPENLLV KSESISRGKT LRSKRVHSRL SEGEESRKPV PSLFKDIQAA
GMVANTCVGP DGPMETTSKN AHGQTPRFPN EGLPARMCTR SFTALSEPRM PAPLEGLKVL
AHQEKLGKKP VCGMKQRVAF KARKRTGRPA PKVVQNPSDP LSLLVPNLVQ NEDFIGQNAK
GLEPHDAEVK DQRSMILRSR TKTQEVYTKR RREKRTAEVR IKNCKTPKKL LSNNHLPPTF
KITPQGGPHK EGKVGKRMKL PKSGPGMSSK MSERPLHSLK RKSTFVSPIP TKKRNLVLRS
SSSSTKEEKA EASPNLFKRM PSTKKARAKL PTKSSCEAAL MPPPAKEPPN VCIKITSRAA
FQGAMKTKVL PPRKGRGLKL EAIVQKITSP NLKKFACKTA AVTATAHSNP LSPAGAEKEQ
ALKNASVTPA VGEAGPLNQG MAQKAPAASV AEQLCRNSNN RSLKGKLMNS KKLSSDCFKG
EAYSSPETVQ YNSSSMAAKS ISVLPKKRNR KGKAAAFSVA KNPLDRRAHL APALLLTARE
RAGAGDALGN GDDGQRDGKK PKTEDKDFAK KEPPEGRSSQ TQTRAQKQRA NHSNYNGYSK
RQRKRHTHSK AKNVASRCKS RAKRRRQQQA PLLNPTEPEI RLKYISCKRL RTDSRAPPFS
PYVRVEKHNE FTTTCTVINS AGEEARLRKE QQPSSSAQAL LPGGASLQPK AALPLSSTMH
LGPVVSKALN AACLVCCLCR NPANYKDLGD LCGPYYPEHC LPKKKSRLKE KIKVEGPSEE
APVPSPAERT LKTTDNNCTT STISGKPPRL DSAADSAKQS ALRSSSRGMF RKLQSCYCCD
ERTEGEEAAE KPRRHECNKA ESPSQESVGD TQEHWVHEAC AVWTAGVYLV AGKLYGLQEA
IKVAAEVRCS SCQQAGATVG CCHKGCVQTY HYACAIDTGC LLTEENFSLK CPKHKRQPL
//