GenomeNet

Database: UniProt
Entry: A0A494YXH7_9BACI
LinkDB: A0A494YXH7_9BACI
Original site: A0A494YXH7_9BACI 
ID   A0A494YXH7_9BACI        Unreviewed;       455 AA.
AC   A0A494YXH7;
DT   05-JUN-2019, integrated into UniProtKB/TrEMBL.
DT   05-JUN-2019, sequence version 1.
DT   08-NOV-2023, entry version 16.
DE   SubName: Full=PAS domain-containing protein {ECO:0000313|EMBL:RKQ14931.1};
GN   ORFNames=D8M05_11755 {ECO:0000313|EMBL:RKQ14931.1};
OS   Oceanobacillus bengalensis.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.
OX   NCBI_TaxID=1435466 {ECO:0000313|EMBL:RKQ14931.1, ECO:0000313|Proteomes:UP000281813};
RN   [1] {ECO:0000313|EMBL:RKQ14931.1, ECO:0000313|Proteomes:UP000281813}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MCCC 1K00260 {ECO:0000313|EMBL:RKQ14931.1,
RC   ECO:0000313|Proteomes:UP000281813};
RX   PubMed=26303283; DOI=10.1007/s10482-015-0573-5;
RA   Yongchang O., Xiang W., Wang G.;
RT   "Oceanobacillus bengalensis sp. nov., a bacterium isolated from seawater of
RT   the Bay of Bengal.";
RL   Antonie Van Leeuwenhoek 108:1189-1196(2015).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:RKQ14931.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; RBZO01000017; RKQ14931.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A494YXH7; -.
DR   OrthoDB; 9771372at2; -.
DR   Proteomes; UP000281813; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 1.
DR   PANTHER; PTHR32071:SF118; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YPLP-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR   PROSITE; PS50112; PAS; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000281813};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          4..59
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          145..375
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
SQ   SEQUENCE   455 AA;  51645 MW;  76A1EC994E4334A8 CRC64;
     MDKELAYLHA VLSAEDDAIT IVNPNEKVMF WNNAAVETYN IPQSIIIGKK ITDFFHNDDL
     MVLKVLHTKE PVKNTYHRPR RDKHVVINAL PIYDENNCLL GAVSAERDIT KIVKLNESLT
     TTSTELNELR QKVYSSKEET PFSKLKGNSA ALHQTIDIAR KAAKTSATTL ILGESGTGKE
     ICARAIHETS KRNLSPFIPV NCGAIPSALF ESELFGYEGG AFTGAEKKGK AGKIEMADGG
     TIFLDEVGEL PLEMQVKLLR VLQENVLYRI GDSTGKKINV RFIAATNQNL EQLMEEKKFR
     SDLYYRLNVI QVKMPPLRNR LEDIPELTQV FLNQYAAQYQ VPLPRIEEGA MEELMHYHWP
     GNIRELRNLI QRIVILTESP IINQNNLLDF FHNEISTPYQ PEKKASFSLP QEKEAMEKQL
     IEETLIKMNG NKSKAAKILG ISRVTLYNKM KKFRI
//
DBGET integrated database retrieval system