ID A0A498HFP1_MALDO Unreviewed; 1175 AA.
AC A0A498HFP1;
DT 05-JUN-2019, integrated into UniProtKB/TrEMBL.
DT 05-JUN-2019, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=Helicase ATP-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=DVH24_007085 {ECO:0000313|EMBL:RXH69829.1};
OS Malus domestica (Apple) (Pyrus malus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus.
OX NCBI_TaxID=3750 {ECO:0000313|EMBL:RXH69829.1, ECO:0000313|Proteomes:UP000290289};
RN [1] {ECO:0000313|EMBL:RXH69829.1, ECO:0000313|Proteomes:UP000290289}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. HFTH1 {ECO:0000313|Proteomes:UP000290289};
RC TISSUE=Young leaf {ECO:0000313|EMBL:RXH69829.1};
RA Hu J.;
RT "A high-quality apple genome assembly.";
RL Submitted (OCT-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RXH69829.1}.
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DR EMBL; RDQH01000342; RXH69829.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A498HFP1; -.
DR STRING; 3750.A0A498HFP1; -.
DR Proteomes; UP000290289; Chromosome 16.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0010494; C:cytoplasmic stress granule; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:1901259; P:chloroplast rRNA processing; IEA:EnsemblPlants.
DR GO; GO:0016554; P:cytidine to uridine editing; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0000373; P:Group II intron splicing; IEA:EnsemblPlants.
DR GO; GO:0006397; P:mRNA processing; IEA:EnsemblPlants.
DR GO; GO:0010497; P:plasmodesmata-mediated intercellular transport; IEA:EnsemblPlants.
DR GO; GO:0016441; P:post-transcriptional gene silencing; IEA:EnsemblPlants.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF8; HELICASE SKI2W; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000290289}.
FT DOMAIN 171..335
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 432..628
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 57..127
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 384..417
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 672..734
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 906..973
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 71..118
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 386..404
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1175 AA; 132477 MW; D1021CACC218D692 CRC64;
MDTLSILTPS DIFTRLLPLS RASHPLPRHP TKTLGFCSPK PPPAHCPTSP RFRVRFQRPS
SAFPAKSQLY DADEEEEEDE YEEEEEDDED VAADEYDDVT GDMSDGLEQS DDEIESSVAD
AEPSTRPEEF KWQRVEKLCG EVKVFGEEMI DDHELASIYD FRIDKFQRLA IQAFLRGSSV
VVSAPTSSGK TLIAEAAAVA TVARRRRLFY TTPLKALSNQ KFREFRETFG DDNVGLLTGD
SAVNKDAQVL VMTTEILRNM LYQSVGMASS GDGLFHVDVI VLDEVHYLSD MYRGTVWEEI
VIYCPKKVQL ICLSATVANP DELAGWIGQI HGKTELVTSS KRPVPLTWHF STKTSLLHLL
DKTGKHMNRR LSVDYLQLNA SGTKSYKDDG SRRRGSRRRG NEMSYDDSNG NMSRRPLSKN
DINLIHRSQV PQITDTLWQL KTRDMLPAIW FIFSRKGCDA AVQYVQDITL LDDCEKSEVE
LALKRFRIKY PDAIRETAVK GLLHGVAAHH AGCLPLWKSF IEELFQRGLV KVVFATETLA
AGINMPARTA IIASLSKRGD TGRVQLSPNE LFQMAGRAGR RGIDEKGHVV LVQSPYEGAE
AGCKIVFAGL EPLVSQFTAS YGMVLNLLAG AKVTHRSNEP DDTEASLSGR TLEEARKLVE
QSFGNYVGSN VMIAAKEELT RIQKEIETLS SEISDEAIDR RSRKILSGPA YKEIADLQEE
LRAEKRLRTE LRRRMESQKM SSLRPLLEEF ENGQLPFLCL QYKDSEGVQQ SIPAVYLGKV
DTVNSSKLKH LVSVDDSFAL NAVACEFEPN VVFEPSYYVA LGSDNSWYLF TEKWIKTVYK
TGFPNVALAL GDALPREIMS TLLDKTELKW EKLAESELGG FWNMEGSLET WSWSLNVPVL
NSLSEHDELL HKSEAYNEAV ERYKDQRNKV SRLKKKISRT QGFREYKKIV DMAKFTEEKI
KRLKSRARRL TNRIEQIEPS GWKEFLQISN VIHETRALDI NTHVIFPLGV TAAAIRGENE
LWLAMVLRNK ILIGLKPPEL AAVCASLVSE GIKVRPWKNN SYIFEPSSKV IDVVSFLDDQ
RSSFLELQEK HGVNKPCYLD TQFSGMVEAW VSGLTWREIM MDCAMDEGDL ARLLRRTIDL
LAQIPKLPDI DPLLQSNAKT ASNIMDRPPI SELAG
//
