ID A0A498JJX7_MALDO Unreviewed; 1001 AA.
AC A0A498JJX7;
DT 05-JUN-2019, integrated into UniProtKB/TrEMBL.
DT 05-JUN-2019, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483};
DE EC=2.3.2.27 {ECO:0000256|ARBA:ARBA00012483};
GN ORFNames=DVH24_024891 {ECO:0000313|EMBL:RXH95207.1};
OS Malus domestica (Apple) (Pyrus malus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus.
OX NCBI_TaxID=3750 {ECO:0000313|EMBL:RXH95207.1, ECO:0000313|Proteomes:UP000290289};
RN [1] {ECO:0000313|EMBL:RXH95207.1, ECO:0000313|Proteomes:UP000290289}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. HFTH1 {ECO:0000313|Proteomes:UP000290289};
RC TISSUE=Young leaf {ECO:0000313|EMBL:RXH95207.1};
RA Hu J.;
RT "A high-quality apple genome assembly.";
RL Submitted (OCT-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000256|ARBA:ARBA00000900};
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SIMILARITY: Belongs to the SINA (Seven in absentia) family.
CC {ECO:0000256|ARBA:ARBA00009119}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RXH95207.1}.
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DR EMBL; RDQH01000333; RXH95207.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A498JJX7; -.
DR STRING; 3750.A0A498JJX7; -.
DR EnsemblPlants; mRNA:MD07G0240600; mRNA:MD07G0240600; MD07G0240600.
DR Gramene; mRNA:MD07G0240600; mRNA:MD07G0240600; MD07G0240600.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000290289; Chromosome 7.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0140662; F:ATP-dependent protein folding chaperone; IEA:InterPro.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0051082; F:unfolded protein binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
DR CDD; cd19497; RecA-like_ClpX; 1.
DR CDD; cd16571; RING-HC_SIAHs; 1.
DR CDD; cd03829; Sina; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR018121; 7-in-absentia-prot_TRAF-dom.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR019489; Clp_ATPase_C.
DR InterPro; IPR004487; Clp_protease_ATP-bd_su_ClpX.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR008974; TRAF-like.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR013010; Znf_SIAH.
DR NCBIfam; TIGR00382; clpX; 1.
DR PANTHER; PTHR48102; ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED; 1.
DR PANTHER; PTHR48102:SF6; CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL; 1.
DR Pfam; PF07724; AAA_2; 1.
DR Pfam; PF10431; ClpB_D2-small; 1.
DR Pfam; PF21362; Sina_RING; 1.
DR Pfam; PF03145; Sina_TRAF; 1.
DR Pfam; PF21361; Sina_ZnF; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM01086; ClpB_D2-small; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF49599; TRAF domain-like; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
DR PROSITE; PS51081; ZF_SIAH; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00455};
KW Reference proteome {ECO:0000313|Proteomes:UP000290289};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00455};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00455}.
FT DOMAIN 662..698
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 715..775
FT /note="SIAH-type"
FT /evidence="ECO:0000259|PROSITE:PS51081"
FT REGION 79..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 602..634
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..107
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 146..164
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1001 AA; 111285 MW; D5798B88CAE765CC CRC64;
MAAALRSKPS RDTASSAASQ FRYFVFNYMH SGRVASSHYA HRTKSDDLFM NTPYHFTSFK
PVLLGGNFVE KGSQIFDHPR ASRRASKNSD KNWGRKLSSS RCNGVMSSQG DPPEVWSGDG
IVVRAAPGSN LVRGGGGGGG PNPGSGGGFD SNSKDENWGG SNLGRNFPTP KEICQGLDKF
VIGQEKAKKV LSVAVYNHYK RIYHESLQKW SAGDSSNGKV DAMDDDRVEL EKSNILLMGP
TGSGKTLLAK TLARFVNVPF VIADATTLTQ AGYVGEDVES ILYKLLTVAD YNVTAAQQGI
VYIDEVDKIT KKAESLNISR DVSGEGVQQA LLKMLEGTVV NVPEKGARKH PRGENIQIDT
KDILFICGGA FIDLEKTISE RRQDSSIGFG APVRANMRTG GVTDAAVTSS LLEIVESSDL
IRYGLIPEFV GRFPILVSLS ALTENQLVEV LTEPKNALGK QYKKMFRMNG VKLHFTESAL
RLIARKAISK NTGARGLRAI LENILMDAMY EIPDVRTGDD IIDAVVIDEE AVGLDGKGCG
AKILYGKGAL DHYLSQNKPK DVEIAAKEGS DGEPEAETEL SSVVASMGRA MDLESIECVS
SSDGLDEDEI HPHHNTTLHP HSHPHPHHHE FSKPRSNVTT NATIAGPTSI APATSVHELL
ECPVCTNSMY PPIHQCHNGH TLCSTCKSRV HNRCPTCRQE LGDIRCLALE KVAESLELPC
KYYSLGCPEI FPYYSKLKHE SVCNFRPYNC PYAGSECSVV GDIPFLVTHL RDDHKVDMHT
GCTFNHRYVK SNPREVENAT WMLTVFHCFG QYFCLHFEAF QLGMAPVYMA FLRFMGDENE
ARNYSYSLEV GANGRKLIWE GTPRSVRDSH RKVRDSHDGL IIQRNMALFF SGGDRKELKL
RVTGRIWKEQ QNQDSGLSTF KRIPAQLHRH FWILSRLNFR LLHYVPPDQS VQLHSRQPHL
HFLWPLQTLS RVLYSRTTWM EVRRRQQLLH FSLLLLLPPA P
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