ID A0A5A7RIJ6_STRAF Unreviewed; 327 AA.
AC A0A5A7RIJ6;
DT 13-NOV-2019, integrated into UniProtKB/TrEMBL.
DT 13-NOV-2019, sequence version 1.
DT 22-FEB-2023, entry version 12.
DE RecName: Full=GAGA-binding transcriptional activator {ECO:0000256|RuleBase:RU367160};
DE Flags: Fragment;
GN ORFNames=STAS_34835 {ECO:0000313|EMBL:GER57053.1};
OS Striga asiatica (Asiatic witchweed) (Buchnera asiatica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Lamiales; Orobanchaceae; Buchnereae; Striga.
OX NCBI_TaxID=4170 {ECO:0000313|EMBL:GER57053.1, ECO:0000313|Proteomes:UP000325081};
RN [1] {ECO:0000313|Proteomes:UP000325081}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. UVA1 {ECO:0000313|Proteomes:UP000325081};
RX PubMed=31522940; DOI=10.1016/j.cub.2019.07.086;
RA Yoshida S., Kim S., Wafula E.K., Tanskanen J., Kim Y.M., Honaas L.,
RA Yang Z., Spallek T., Conn C.E., Ichihashi Y., Cheong K., Cui S., Der J.P.,
RA Gundlach H., Jiao Y., Hori C., Ishida J.K., Kasahara H., Kiba T., Kim M.S.,
RA Koo N., Laohavisit A., Lee Y.H., Lumba S., McCourt P., Mortimer J.C.,
RA Mutuku J.M., Nomura T., Sasaki-Sekimoto Y., Seto Y., Wang Y., Wakatake T.,
RA Sakakibara H., Demura T., Yamaguchi S., Yoneyama K., Manabe R.I.,
RA Nelson D.C., Schulman A.H., Timko M.P., dePamphilis C.W., Choi D.,
RA Shirasu K.;
RT "Genome Sequence of Striga asiatica Provides Insight into the Evolution of
RT Plant Parasitism.";
RL Curr. Biol. 29:3041-3052.e4(2019).
CC -!- FUNCTION: Transcriptional regulator that specifically binds to GA-rich
CC elements (GAGA-repeats) present in regulatory sequences of genes
CC involved in developmental processes. {ECO:0000256|RuleBase:RU367160}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU367160}.
CC -!- SIMILARITY: Belongs to the BBR/BPC family.
CC {ECO:0000256|ARBA:ARBA00007911, ECO:0000256|RuleBase:RU367160}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GER57053.1}.
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DR EMBL; BKCP01012959; GER57053.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A5A7RIJ6; -.
DR Proteomes; UP000325081; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:UniProtKB-UniRule.
DR InterPro; IPR010409; GAGA-bd_tscrpt_act.
DR InterPro; IPR039632; TMEM42.
DR PANTHER; PTHR31965; TRANSMEMBRANE PROTEIN 42; 1.
DR PANTHER; PTHR31965:SF1; TRANSMEMBRANE PROTEIN 42; 1.
DR Pfam; PF06217; GAGA_bind; 1.
DR SMART; SM01226; GAGA_bind; 1.
DR SUPFAM; SSF103481; Multidrug resistance efflux transporter EmrE; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|RuleBase:RU367160};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Nucleus {ECO:0000256|RuleBase:RU367160};
KW Reference proteome {ECO:0000313|Proteomes:UP000325081};
KW Transcription {ECO:0000256|RuleBase:RU367160};
KW Transcription regulation {ECO:0000256|RuleBase:RU367160};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 32..49
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 61..81
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 87..104
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT COILED 240..267
FT /evidence="ECO:0000256|SAM:Coils"
FT NON_TER 327
FT /evidence="ECO:0000313|EMBL:GER57053.1"
SQ SEQUENCE 327 AA; 36876 MW; DBAA400BFE90B601 CRC64;
MEIERKKGYA WAASAGLNAA LAAISAKFFS SQLKYALVIF FNVIMRGCYV NSMRSLSSLQ
ATVTNFATNF LSSGLSGFFL FEEALPLKWF AGAVLIVIGV IILSKSSIDK KTHTSQITEE
KDSVVRFMSK KVPLLEDFAE RCSPLFVSIL HIMYQCIFLS RFISTFFYST STRLANYHPG
PLHIRQTNTA LISDMDDSSH RENGRHKPPQ GQWLMRHQPS MKQIMAIMAE RDAAIQERNL
AVSEKKAALA ERDMAILQRD SAIAERNIAI IERGNAIATL QYRENALIVA SCECYVHLHV
RHSRRLPEGH VRFQRGQQAI NNVNTND
//
