ID   A0A5J4Z3S9_PORPP        Unreviewed;      1078 AA.
AC   A0A5J4Z3S9;
DT   11-DEC-2019, integrated into UniProtKB/TrEMBL.
DT   11-DEC-2019, sequence version 1.
DT   27-MAR-2024, entry version 12.
DE   SubName: Full=Nuclear export mediator factor Nemf {ECO:0000313|EMBL:KAA8497307.1};
GN   ORFNames=FVE85_1036 {ECO:0000313|EMBL:KAA8497307.1};
OS   Porphyridium purpureum (Red alga) (Porphyridium cruentum).
OC   Eukaryota; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae;
OC   Porphyridium.
OX   NCBI_TaxID=35688 {ECO:0000313|EMBL:KAA8497307.1, ECO:0000313|Proteomes:UP000324585};
RN   [1] {ECO:0000313|Proteomes:UP000324585}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCMP 1328 {ECO:0000313|Proteomes:UP000324585};
RX   PubMed=31645564; DOI=10.1038/s41467-019-12779-1;
RA   Lee J., Kim D., Bhattacharya D., Yoon H.S.;
RT   "Expansion of phycobilisome linker gene families in mesophilic red algae.";
RL   Nat. Commun. 10:4823-4823(2019).
CC   -!- SIMILARITY: Belongs to the NEMF family.
CC       {ECO:0000256|ARBA:ARBA00008318}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KAA8497307.1}.
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DR   EMBL; VRMN01000002; KAA8497307.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A5J4Z3S9; -.
DR   Proteomes; UP000324585; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR   GO; GO:0072344; P:rescue of stalled ribosome; IEA:UniProt.
DR   Gene3D; 2.30.310.10; ibrinogen binding protein from staphylococcus aureus domain; 1.
DR   InterPro; IPR021846; NFACT-C.
DR   InterPro; IPR008532; NFACT_RNA-bd.
DR   PANTHER; PTHR15239; NUCLEAR EXPORT MEDIATOR FACTOR NEMF; 1.
DR   PANTHER; PTHR15239:SF6; RIBOSOME QUALITY CONTROL COMPLEX SUBUNIT NEMF; 1.
DR   Pfam; PF11923; NFACT-C; 1.
DR   Pfam; PF05670; NFACT-R_1; 1.
DR   Pfam; PF05833; NFACT_N; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Reference proteome {ECO:0000313|Proteomes:UP000324585}.
FT   DOMAIN          549..663
FT                   /note="NFACT RNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF05670"
FT   DOMAIN          960..1058
FT                   /note="NFACT protein C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF11923"
FT   REGION          51..71
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          446..468
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          762..866
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          880..923
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        771..793
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        827..845
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        880..896
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        903..921
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1078 AA;  118185 MW;  EF2E810048378A2C CRC64;
     MGKTRMSALD MQVQAHVLNE RLKGALVANV YDVNTRTYLL KLAVPPRYVK ESDVPQDESA
     PSTGEKEKKE VDAEGWNKVL LLIESGARIH TTQFSRDKSV VPSGFALKLR KHIRTRRLHE
     IRQLGSDRVL DLTFVASGSV VAHLILEFYA GGNVILTDEN YKILSLLRNY ESEAAGKVAV
     KEAYPVQAAR QEVRTEMTAS YAKQVADAAP DAKIQARKYL ATALELGPEL VDHALCESDL
     PLTIKMHELQ QKDAADATFE ALAKSFSKLQ RLLRGEPVPD MPVEGHIFLS QKNGDVYENF
     GPFKLKQFQN NACTTFSTFD AALDEYFAKL ESMKDVEVRQ KKEAAVIKKV DKLRAELDAR
     LSDLNEQQSV NEAKAHLIEL NAEDIDAVLL LLRQGLASGM DWDDLRTNVK QLQKAGHPLL
     QIVHELKFER NSVVLMLSEP DGLYDADVDV DDGGGNDDDP GDGSNAEVNG AATRSAELVE
     ISLDQGAYAN AAHYHAGRKS AASKEQTAIK ASGKALKAAE QKAREEVRRV NANSKGGVRE
     IRKTYWFEKF SWFISSENFL VIAGRDAQQN EILVRRYLEQ DDVYVHADIF GAASVLVKNR
     KIAGSFEPIP PLTLSQAGTF AMCRSSAWSA KVVTSAWWVY ANQVSKTAPS GEYLTTGSFM
     IRGRKNFLPP MQLVMGFGVL FRVDPSCAAN HLNERTIRYE DSSARGDGAA MAKALLSATQ
     VSEDFDVDDD DDVMLSAGLK ERTNKIGAAK ADADVSFVDT VSGQPERTEQ VSAVAKKHIS
     VKERKDAKKM NKGDSSHTPA PGVEGTTGAE EEEMASGDGS RATPAAASGG DGTSSPPSLK
     QQNIPRGKRS KVKKMKKKYA EQTEEERELA LQMLGAMKLK EERAADEQKE KKQTVAAGES
     RATAGDMSSQ ADVSTEKGSN GQRGVDVKMT FKERKAEARQ VKQLMQDEGI YELSPAELDA
     LSSLDLFTSV PVQDDIIEFA LPVCAPYSAL SSYRYKVKLL PGTLKRGKAY KQAHSVFLHA
     AEKALTSAPP SCSVAERDAL RGISENDAIM TIMSDVRVQA PGLQNVQQKA GKKKKTQK
//