ID A0A5N5G221_9ROSA Unreviewed; 806 AA.
AC A0A5N5G221;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 27-MAR-2024, entry version 11.
DE RecName: Full=Gypsy retrotransposon integrase-like protein 1 {ECO:0000256|ARBA:ARBA00039658};
GN ORFNames=D8674_012345 {ECO:0000313|EMBL:KAB2609177.1};
OS Pyrus ussuriensis x Pyrus communis.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus.
OX NCBI_TaxID=2448454 {ECO:0000313|EMBL:KAB2609177.1, ECO:0000313|Proteomes:UP000327157};
RN [1] {ECO:0000313|EMBL:KAB2609177.1, ECO:0000313|Proteomes:UP000327157}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S2 {ECO:0000313|EMBL:KAB2609177.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:KAB2609177.1};
RA Ou C.;
RL Submitted (SEP-2019) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000327157}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Wang F., Wang J., Li S., Zhang Y., Fang M., Ma L., Zhao Y., Jiang S.;
RT "A de novo genome assembly of a pear dwarfing rootstock.";
RL Submitted (OCT-2019) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:KAB2609177.1, ECO:0000313|Proteomes:UP000327157}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S2 {ECO:0000313|EMBL:KAB2609177.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:KAB2609177.1};
RA Wang F., Wang J., Li S., Zhang Y., Fang M., Ma L., Zhao Y., Jiang S.;
RT "A de novo genome assembly of a pear dwarfing rootstock.";
RL Submitted (NOV-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAB2609177.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; SMOL01000553; KAB2609177.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A5N5G221; -.
DR Proteomes; UP000327157; Chromosome 14.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR47266; ENDONUCLEASE-RELATED; 1.
DR PANTHER; PTHR47266:SF28; GYPSY RETROTRANSPOSON INTEGRASE-LIKE PROTEIN 1; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000327157}.
FT DOMAIN 489..662
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 181..231
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 201..215
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 806 AA; 91037 MW; 6C9034551BE5DCAC CRC64;
MVEVEIEEPS KGKAIATEVE KTLTPEEGYV REYKVNRMLV DGGSAINIMP KSTMTIIGIK
VNELSLSRLL IQGFNQGGQK AMGMIRVEMT IGELKSSTIF HVIDARTSYS LLLGRPWIHA
NGVVPSTLHQ CLKFYREGVK VIQGDTKPFT EAESHFADAK FYMDEDMVPE ALPEDIRSTG
KAAPTKQEWQ VIPKMQKEQT VPSSSKDDDE FAKPATTKGS RTPSEGPNAP IFRYIPMSRR
KNALPKKVES SFLPTKRTEE GFDPNAYKLM SKAGYDFASS AVAGKKVSNT VNDEERNLTK
TQKKLKEHGY GVDNNKAGLG FTPNAPLIEA GFIREVQYPK WISNIVIVLK KSGQIRVCVD
FRDLNDACPK DDFPLPIIEI MVDATTGHEA LSFMDGSSGY NQIRMALEDE ELTAFRTPKG
IYCYKVRKDD LVPYFRLATQ LLRKFEAVTL EHVPRKENQM ADALANLAST CQFHANFIHQ
PPEPLHPTVA SWPFDAWGLD VVGPITPKSS AGEAYILAAT DYFSKWAEAI PLREVKKETV
VRFIKEHIIH RYGVPRYIIT DNGKQFSNRL VDELCDKYKF KQHKSSMYHA PANGLAEAFN
KTLCNLLKKV IGRTKRDWHE RITVLPLESQ IPSLRMAIQE GLTDEENAKL RLQELEALDE
RRLEAQQHLE CYQARVQLHP HLAHSALAHV GHRARTLNTK SEGLLNGQLI GPYYCSCCGV
LHHGKTRAVL SKKALVQKSK RRRSEIKEAY SKIEEPSLFQ KAGFAGSKHK RSKFRSSEET
KRIFQPSSRL SLRKINDWRK PENLPV
//