ID A0A5N5L377_PANHP Unreviewed; 456 AA.
AC A0A5N5L377;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 22-FEB-2023, entry version 8.
DE RecName: Full=IF rod domain-containing protein {ECO:0000259|PROSITE:PS51842};
GN ORFNames=PHYPO_G00114370 {ECO:0000313|EMBL:KAB5537050.1};
OS Pangasianodon hypophthalmus (Striped catfish) (Helicophagus hypophthalmus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
OC Pangasiidae; Pangasianodon.
OX NCBI_TaxID=310915 {ECO:0000313|EMBL:KAB5537050.1, ECO:0000313|Proteomes:UP000327468};
RN [1] {ECO:0000313|EMBL:KAB5537050.1, ECO:0000313|Proteomes:UP000327468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Indonesia {ECO:0000313|EMBL:KAB5537050.1,
RC ECO:0000313|Proteomes:UP000327468};
RC TISSUE=Blood {ECO:0000313|EMBL:KAB5537050.1};
RA Wen M., Zahm M., Roques C., Cabau C., Klopp C., Donnadieu C., Jouanno E.,
RA Avarre J.-C., Campet M., Ha T.T.T., Dugue R., Lampietro C., Louis A.,
RA Herpin A., Echchiki A., Berthelot C., Parey E., Roest-Crollius H.,
RA Braasch I., Postlethwait J., Bobe J., Montfort J., Bouchez O., Begum T.,
RA Schartl M., Guiguen Y.;
RT "A chromosome-scale genome assembly of the striped catfish, Pangasianodon
RT hypophthalmus.";
RL Submitted (JUN-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|RuleBase:RU000685}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAB5537050.1}.
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DR EMBL; VFJC01000021; KAB5537050.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A5N5L377; -.
DR OrthoDB; 4640531at2759; -.
DR Proteomes; UP000327468; Chromosome 20.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR006821; Intermed_filament_DNA-bd.
DR InterPro; IPR002957; Keratin_I.
DR PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR PANTHER; PTHR45652:SF14; PERIPHERIN; 1.
DR Pfam; PF00038; Filament; 1.
DR Pfam; PF04732; Filament_head; 1.
DR PRINTS; PR01248; TYPE1KERATIN.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR PROSITE; PS00226; IF_ROD_1; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|RuleBase:RU000685};
KW Reference proteome {ECO:0000313|Proteomes:UP000327468}.
FT DOMAIN 84..397
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT REGION 431..456
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 74..229
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 288..375
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 456 AA; 52926 MW; DAA88E983D0C44DA CRC64;
MSQSTIRTSY RRTFGGPTPM SAMPSYTSYS SRYLGPAPAA MSTRTFRVRS SAPAPSVPRL
SYDKVDFSLA DSINQEFLST RSNEKQELQE LNDRFASFIE KVRYLEQQNA MLTHELNQYK
GKQQQGQPNR ASQLCQQEMR ELRRQVELIG KERDQIQVDR DNMAEDLALL KQRLDEETQK
RQDAENQLVL FRKDVDDATL ARLELERKIE SLMDEIEFLK KLHDEEIQDV QVSYETQQMK
MEVEATVRPD LTAALRDIRA QYESIATKNM QESEEWYKSK FTDLTDSAKR NADAMRQAKQ
EANEFRRQIQ SLNCEIDALK STNEALLRQM REMEDQFGVE AGNYQDSITR LEEEIRHLKD
EMSRHLREYQ DLLNVKMALD IEIATYRKLL EGEESRIAIP VMNITSIGMR NGDYDLPADV
GHGKKVVIKT VETRDGEVVK ESTKEKDTPR DSKESN
//
