ID A0A5N6LHH8_9ASTR Unreviewed; 998 AA.
AC A0A5N6LHH8;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 24-JAN-2024, entry version 13.
DE RecName: Full=Nuclear pore complex protein NUP88 {ECO:0008006|Google:ProtNLM};
GN ORFNames=E3N88_42524 {ECO:0000313|EMBL:KAD1625214.1};
OS Mikania micrantha.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Asteroideae;
OC Heliantheae alliance; Eupatorieae; Mikania.
OX NCBI_TaxID=192012 {ECO:0000313|EMBL:KAD1625214.1, ECO:0000313|Proteomes:UP000326396};
RN [1] {ECO:0000313|EMBL:KAD1625214.1, ECO:0000313|Proteomes:UP000326396}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NLD-2019 {ECO:0000313|EMBL:KAD1625214.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:KAD1625214.1};
RA Liu B.;
RT "Mikania micrantha, genome provides insights into the molecular mechanism
RT of rapid growth.";
RL Submitted (MAY-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}. Nucleus, nuclear
CC pore complex {ECO:0000256|ARBA:ARBA00004567}. Plastid membrane
CC {ECO:0000256|ARBA:ARBA00004446}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004446}.
CC -!- SIMILARITY: Belongs to the reaction center PufL/M/PsbA/D family.
CC {ECO:0000256|ARBA:ARBA00008204}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAD1625214.1}.
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DR EMBL; SZYD01000626; KAD1625214.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A5N6LHH8; -.
DR Proteomes; UP000326396; Unassembled WGS sequence.
DR GO; GO:0005643; C:nuclear pore; IEA:UniProtKB-SubCell.
DR GO; GO:0009523; C:photosystem II; IEA:UniProtKB-KW.
DR GO; GO:0042170; C:plastid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016168; F:chlorophyll binding; IEA:UniProtKB-KW.
DR GO; GO:0045156; F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0017056; F:structural constituent of nuclear pore; IEA:InterPro.
DR GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
DR GO; GO:0009772; P:photosynthetic electron transport in photosystem II; IEA:InterPro.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR GO; GO:0000055; P:ribosomal large subunit export from nucleus; IEA:InterPro.
DR GO; GO:0000056; P:ribosomal small subunit export from nucleus; IEA:InterPro.
DR Gene3D; 1.20.85.10; Photosystem II protein D1-like; 1.
DR InterPro; IPR019321; Nucleoporin_Nup88.
DR InterPro; IPR037700; NUP88/NUP82.
DR InterPro; IPR036854; Photo_II_D1/D2_sf.
DR InterPro; IPR000484; Photo_RC_L/M.
DR PANTHER; PTHR13257:SF0; NUCLEAR PORE COMPLEX PROTEIN NUP88; 1.
DR PANTHER; PTHR13257; NUCLEOPORIN NUP84-RELATED; 1.
DR Pfam; PF10168; Nup88; 2.
DR Pfam; PF00124; Photo_RC; 1.
DR SUPFAM; SSF81483; Bacterial photosystem II reaction centre, L and M subunits; 1.
PE 3: Inferred from homology;
KW Acetylation {ECO:0000256|ARBA:ARBA00022990};
KW Chlorophyll {ECO:0000256|ARBA:ARBA00022494};
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Electron transport {ECO:0000256|ARBA:ARBA00022982};
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Membrane {ECO:0000256|ARBA:ARBA00023136};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW mRNA transport {ECO:0000256|ARBA:ARBA00022816};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Photosynthesis {ECO:0000256|ARBA:ARBA00022531};
KW Photosystem II {ECO:0000256|ARBA:ARBA00023276};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000326396};
KW Translocation {ECO:0000256|ARBA:ARBA00023010};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT REGION 147..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 791..832
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 148..168
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 998 AA; 111064 MW; 14728E5E0C6E2BBD CRC64;
MDAMQTSNKR KLGCLVSDCV TRPPFSNPGH SALLASLPSC PTDVLEMIPW DGCKAKQIAS
APRTEDCVGC AIIPTSAAIG LHFYPIWEAA SVDEWLYNGG PYELIVLHFL LGVACYMGRE
WELSFRLGQQ RHPRLLRRMR FNFDIPEPSS EETLTPLSRS PSSTTPANDE VEWLPLQNHP
IFSGATSSNN VPRRRNLMAW DGASRLYYWD INTQSLHRIS LRFGEPDPTS VLAASPSKVL
RADVELNFIV DRISINRHGS ALLLEGSNGL RVMYLYGRSS SKDSAIICRT ISVGSDLYLN
TNNAIRTLKV SWHPYSDTHL GILSSDSVFR LYDLSLAIEQ PEQEYYLQPV ARGRSRNASS
ICPIDFSFGG DHLWDRFSVF VLFSDGAVYI LCPVVPFGSV YKWESVLEIY CDAQTFGLES
GSSKAFSNAT LAISWLEATF PELARQAAEG GNQPALKSHP YALFHASVSL QGPLHNVCHG
NEEDSEFKVT ECEGRAVSFL YKAVSKDSIL VTVWSGGKLQ IDALADEIQP VWMVGNHPRI
SVDSQNRIVG FAMICETHFN EPSVVPSEQS SDKNIWLGHL PPLLRLGIVD LALPRKTETS
SIISLFIDPL IPERIYCVHD GGVDSAVLHF LPFTNQKNGL DDDMRAPTVQ SVLNTCQVES
SVSSLYGFVA LADSFGSCWI VGLTSGFECI VLGMESWNLL LPVRADKEKK FENLEENTVT
GDATVISKEL LTGPKVVIVP PTSPNPVATD SIEGRSTLHQ YFKLFHENYV EYAHKVYFEL
KHHGPQLKKI IDEQHARLRE AQQKLAKVEE KQEKLENRID HAIETHGFLE ERLLNLRNLP
GIHKKPLSKA EREFKMELDR FRGLELDALH TTIEAINGRI TRYSSSPQSK RPNQRRQIAE
RRKGNSEDDE ISQLKSSIAK LSLVNSENTK KVKLVDSALR NRDGTNLGFI PGSDLMEGEG
LRIQSGSRAS GGTLTHIGDS SNSILAITRQ ETKDSTLG
//
