ID A0A5N6NCM6_9ASTR Unreviewed; 1479 AA.
AC A0A5N6NCM6;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN ORFNames=E3N88_22601 {ECO:0000313|EMBL:KAD4585000.1};
OS Mikania micrantha.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Asteroideae;
OC Heliantheae alliance; Eupatorieae; Mikania.
OX NCBI_TaxID=192012 {ECO:0000313|EMBL:KAD4585000.1, ECO:0000313|Proteomes:UP000326396};
RN [1] {ECO:0000313|EMBL:KAD4585000.1, ECO:0000313|Proteomes:UP000326396}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NLD-2019 {ECO:0000313|EMBL:KAD4585000.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:KAD4585000.1};
RA Liu B.;
RT "Mikania micrantha, genome provides insights into the molecular mechanism
RT of rapid growth.";
RL Submitted (MAY-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the Alfin family.
CC {ECO:0000256|ARBA:ARBA00010445}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAD4585000.1}.
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DR EMBL; SZYD01000012; KAD4585000.1; -; Genomic_DNA.
DR Proteomes; UP000326396; Miscellaneous, Linkage group lg2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0042393; F:histone binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd15613; PHD_AL_plant; 1.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR021998; Alfin_N.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR044104; PHD_AL_plant.
DR InterPro; IPR032460; Symplekin/Pta1_N.
DR InterPro; IPR022075; Symplekin_C.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR47184:SF2; DUF3453 DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47184; PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED; 1.
DR Pfam; PF12165; Alfin; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF11935; SYMPK_PTA1_N; 1.
DR Pfam; PF12295; Symplekin_C; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000326396};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 1424..1476
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 359..405
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 459..480
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 511..545
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 625..648
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1393..1427
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 362..377
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 384..405
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 511..528
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 529..545
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1402..1416
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1479 AA; 163416 MW; 19FE21256646EAF8 CRC64;
MMAAISTERF SGLIHSAKFS ADVPSKLDNL RKLKDEFSLA EDPHLVTHFF PQLLDLHTDR
CSPVRRFIAE IAGDVGLNYM DLLPDIVPLL ITLLRDGIPA VARQAITCGI SLFRRVFIKI
AMQGLYSNEL DYSLESAWVW MLKLKDEIYS LAYQAESDGR KLLAFKFVEA VTLLYTADPS
ASSEPPEDHT SGGEFNIAWL RGGHPTLNVA DLSLEASKNL GLLLDPLRFP AVKSHSNMVV
IVLIKSLSEI AKKRPAFYGR ILPVLLGLDP SNSVVKAGRI SGVHHALKNA FLVCLKCTHP
GAAPWRDRLV GTLREMKAGV LAEEALHQVS RGNSSIAQDT KPSIEACDAV HSVTVRKRPE
LQNANDLNKD DDVPGKRVKP TPNLNEELKS NNGNSSSKLT TTKRNVDSGP VQQLISMFSS
LVAQGEQSAA MLDVLISSIS ADLLAQVVMA NMPNLPPVCP KEESEKELPN TESHPATVGG
ATQVSNLSAY LTDILSKSTN SQLTQSAFET HIDEKPEVEE EKPAAKDSDV ADSTTNQSLV
PLSPPVSHNL PSMRIVSLGI PSEDVEIGEL EDGIPGLESS AKNVGMPEIT KMDTSPVISV
DLEENSQEQI TKMVTSSVDI FPTMSTDKSE EFSPKGAMAE TNSNNSSTAT SLQLTSKVVL
PKMSAPVVNL NDEQKDHIQK LAFIHIIEAY KHTSVAGGSQ LRFSLLSYLG VEFPLELDPW
SLLQTHILSD YINHEGHELT LNVLYRLFGE AEADHDFFSS TTATSVYEMF LLKVAEALRD
SFSPSDRSLS RLLNEVPYLP KSVLKLLECL CVPGNNDKDK ELHSGDRVHQ GLSIVWSLIL
LRPPIRDVCL KIALQSAVHH LEEVQTKAIR LVANRLYPMP SISQQIEDFA KEKLLSAMNG
DNSVDKARID GSNTELAMDM QMEKPLTESV SAINKDSSAE VGQLLISEST PSPSVTDAQR
CMSLYFALCT KKHSLFRQLL IVYKNMPKAA KQAISVQIPK LVRTIGSSSQ LLEIIADPPA
GSENLLMQVL QTLTDGAIPS PELITTIKKL YDTKLKDAEI LIPILPFLPK DEILQMFYCF
VNLPLDKFQA ALARMLQESP QGRSVLTPAE VLIAIHGIDL EKDGIPLKKV TDACNICFQQ
RQIFTQQVLA KVLNQLVEHI PLPMLFMRTV IQTLDAFPSL VDFIMEILSR LVSKQIWKQQ
KLWVGFLKCV QITKPQSFSV LLQLPPAILK LALNKQPMLK GHLVSHASQP DIRASLPSPR
SVEEIFKDYT ARRAAILRAL TYDVDEFYGI CDPEKENLCL YGHPNERWEV SLPAEEVPPE
LPEPALGINF ARDGMNRKDW LSLVAVHSDC WLLSVAFYLG ARLNSYERKR LFGMINDMPT
VFEVVSVKDK PSAAESGSKA KRSSDGQVKR AAADDEEEED EHGETQCGSC GGSYNGDEFW
IGCDICERWY HGKCVKITPA KAETIKHYKC PSCTIKRGR
//
